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// Copyright 2016 Google Inc.
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.
syntax = "proto3";
package google.genomics.v1;
import "google/api/annotations.proto";
import "google/genomics/v1/readgroup.proto";
import "google/protobuf/struct.proto";
option cc_enable_arenas = true;
option go_package = "google.golang.org/genproto/googleapis/genomics/v1;genomics";
option java_multiple_files = true;
option java_outer_classname = "ReadGroupSetProto";
option java_package = "com.google.genomics.v1";
// A read group set is a logical collection of read groups, which are
// collections of reads produced by a sequencer. A read group set typically
// models reads corresponding to one sample, sequenced one way, and aligned one
// way.
//
// * A read group set belongs to one dataset.
// * A read group belongs to one read group set.
// * A read belongs to one read group.
//
// For more genomics resource definitions, see [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
message ReadGroupSet {
// The server-generated read group set ID, unique for all read group sets.
string id = 1;
// The dataset to which this read group set belongs.
string dataset_id = 2;
// The reference set to which the reads in this read group set are aligned.
string reference_set_id = 3;
// The read group set name. By default this will be initialized to the sample
// name of the sequenced data contained in this set.
string name = 4;
// The filename of the original source file for this read group set, if any.
string filename = 5;
// The read groups in this set. There are typically 1-10 read groups in a read
// group set.
repeated ReadGroup read_groups = 6;
// A map of additional read group set information.
map<string, google.protobuf.ListValue> info = 7;
}
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