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I have a remote rsync with gpg encryption and can restore without problems on my thinkpad (FreeBSD) - but not on my MacOSX:
$ git annex whereis DSC_7615.JPG
whereis DSC_7615.JPG (2 copies)
6855de17-c8fb-11e1-9948-f0def1c18073 -- thinkpad
e388bcf6-c8fc-11e1-a96f-6ffcbceb4af4 -- backup (rsync xxxx)
ok
$ git annex get --from backup DSC_7615.JPG
fatal: Could not switch to '../../../.git/annex/objects/Pw/XP/SHA256-s1028494--SHA256': No such file or directory
git-annex: <file descriptor: 6>: hGetLine: end of file
failed
git-annex: get: 1 failed
$ git annex version
git-annex version: 3.20120629
local repository version: 3
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