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### Please describe the problem.
I have files that match annex.largefiles and therefore should be added to git but not to annex, they seem to be getting corrupted after cloning the repo.
### What steps will reproduce the problem?
I couldn't immediately find the exact steps to reproduce the issue but I have multiple git repositories showing this.
### What version of git-annex are you using? On what operating system?
The problem has occurred a while ago but I have just noticed it. This is on macOS if it helps. I also tend to use the latest released version of git-annex (installed via Homebrew)
### Please provide any additional information below.
[[!format sh """
# If you can, paste a complete transcript of the problem occurring here.
# If the problem is with the git-annex assistant, paste in .git/annex/daemon.log
$ cd Documents
$ cat .gitattributes
* annex.largefiles=((not(mimetype=text/*))or(largerthan=100kb))
*.png binary
*.jpg binary
*.jpeg binary
*.gif binary
*.ico binary
*.mp3 binary
*.fla binary
*.mov binary
*.mp4 binary
*.flv binary
*.swf binary
*.avi binary
*.mkv binary
*.mpg binary
*.mpeg binary
*.gz binary
*.zip binary
*.7z binary
*.rar binary
*.bz2 binary
*.ttf binary
*.pdf binary
$ ls -la Docs/2016-XXX/XXX/
total 696
drwx------@ 4 denis staff 136 Jul 11 15:05 ./
drwxr-xr-x@ 9 denis staff 306 Dec 12 19:42 ../
-rwxr-xr-x@ 1 denis staff 265898 Jul 11 13:03 XXX.pdf*
-rwxr-xr-x@ 1 denis staff 89586 Jul 11 13:03 Summary.pdf*
$ file --mime-type Docs/2016-XXX/XXX/XXX.pdf
Docs/2016-XXX/XXX/XXX.pdf: application/pdf
$ git show 60a76858a57a73967131b929af45a99703f67335
commit 60a76858a57a73967131b929af45a99703f67335
Author: Denis Dzyubenko <denis@ddenis.info>
Date: Mon Jul 11 15:05:37 2016 +0200
XXX
diff --git a/Docs/2016-XXX/XXX/XXX.pdf b/Docs/2016-XXX/XXX/XXX.pdf
new file mode 100755
index 00000000..112f68d0
Binary files /dev/null and b/Docs/2016-XXX/XXX/XXX.pdf differ
diff --git a/Docs/2016-XXX/XXX/Summary.pdf b/Docs/2016-XXX/XXX/Summary.pdf
new file mode 100755
index 00000000..3828383e
Binary files /dev/null and b/Docs/2016-XXX/XXX/Summary.pdf differ
diff --git a/Docs/2016-XXX/XXX.pdf b/Docs/2016-XXX/XXX.pdf
deleted file mode 120000
index 6d347a22..00000000
--- a/Docs/2016-XXX/XXX.pdf
+++ /dev/null
@@ -1 +0,0 @@
-../../.git/annex/objects/zJ/X1/SHA256E-s190749--ee0c8329c88f9c1656cc75cf37d4df64060a022e73d199164c5e5222ba1739d1.pdf/SHA256E-s190749--ee0c8329c88f9c1656cc
\ No newline at end of file
$ git clone Documents Documents.tmp
Cloning into 'Documents.tmp'...
done.
$ cd ./Documents.tmp/
$ ls -la Docs/2016-XXX/XXX/
total 184
drwxr-xr-x 4 denis staff 136 Dec 19 00:09 ./
drwxr-xr-x 8 denis staff 272 Dec 19 00:09 ../
-rwxr-xr-x 1 denis staff 101 Dec 19 00:09 XXX.pdf*
-rwxr-xr-x 1 denis staff 89586 Dec 19 00:09 Summary.pdf*
$ cat Docs/2016-XXX/XXX/XXX.pdf
/annex/objects/SHA256E-s265898--9c750c01dce9689ac3880224d2e95da6287b0cc89759c0c882e7a9a0fe48d664.pdf
# End of transcript or log.
"""]]
### Have you had any luck using git-annex before? (Sometimes we get tired of reading bug reports all day and a lil' positive end note does wonders)
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