fixed documentation links

7 files changed, 2 insertions, 395 deletions

diff --git a/doc/Makefile b/doc/Makefile
index 7e3c32e..a37743e 100644
--- a/doc/Makefile
+++ b/doc/Makefile
@@ -20,7 +20,7 @@ $(MANUAL_DIR):
 web-manual: $(MANUAL_DIR) $(MAN_DEPS)
 	@make -C $(MANUAL_SRC)
 	@cp -r $(MANUAL_SRC)/figures $(MANUAL_DIR)
-	@cp -r $(MANUAL_SRC)/images $(MANUAL_DIR)
+#	@cp -r $(MANUAL_SRC)/images $(MANUAL_DIR)
 	@cp $(MANUAL_SRC)/*.html $(MANUAL_DIR)
 	@cp $(MANUAL_SRC)/*.css $(MANUAL_DIR)
 #	@mv $(MANUAL_SRC)/*.html $(MANUAL_DIR)
diff --git a/doc/manual_src/gettingStarted.md b/doc/manual_src/gettingStarted.md
index 5e362d4..44757b1 100644
--- a/doc/manual_src/gettingStarted.md
+++ b/doc/manual_src/gettingStarted.md
@@ -238,5 +238,5 @@ caused the violation.
 ## Where to go from here
 
 For more detail on the API available when writing new rules, see the
-[Javascript documentation](jsdoc/index.html).
+[Javascript documentation](../jsdoc/index.html).
 
diff --git a/doc/manual_src/images/code-tag.png b/doc/manual_src/images/code-tag.png
deleted file mode 100644
index 6497ed2..0000000
--- a/doc/manual_src/images/code-tag.png
+++ /dev/null
diff --git a/doc/manual_src/images/images/Galois_design_03.png b/doc/manual_src/images/images/Galois_design_03.png
deleted file mode 100644
index c7fc299..0000000
--- a/doc/manual_src/images/images/Galois_design_03.png
+++ /dev/null
diff --git a/doc/manual_src/images/logo.png b/doc/manual_src/images/logo.png
deleted file mode 100644
index 151d3f0..0000000
--- a/doc/manual_src/images/logo.png
+++ /dev/null
diff --git a/doc/manual_src/reset.css b/doc/manual_src/reset.css
deleted file mode 100644
index af94440..0000000
--- a/doc/manual_src/reset.css
+++ /dev/null
@@ -1,48 +0,0 @@
-/* http://meyerweb.com/eric/tools/css/reset/ 
-   v2.0 | 20110126
-   License: none (public domain)
-*/
-
-html, body, div, span, applet, object, iframe,
-h1, h2, h3, h4, h5, h6, p, blockquote, pre,
-a, abbr, acronym, address, big, cite, code,
-del, dfn, em, img, ins, kbd, q, s, samp,
-small, strike, strong, sub, sup, tt, var,
-b, u, i, center,
-dl, dt, dd, ol, ul, li,
-fieldset, form, label, legend,
-table, caption, tbody, tfoot, thead, tr, th, td,
-article, aside, canvas, details, embed, 
-figure, figcaption, footer, header, hgroup, 
-menu, nav, output, ruby, section, summary,
-time, mark, audio, video {
-	margin: 0;
-	padding: 0;
-	border: 0;
-	font-size: 100%;
-	font: inherit;
-	vertical-align: baseline;
-}
-/* HTML5 display-role reset for older browsers */
-article, aside, details, figcaption, figure, 
-footer, header, hgroup, menu, nav, section {
-	display: block;
-}
-body {
-	line-height: 1;
-}
-ol, ul {
-	list-style: none;
-}
-blockquote, q {
-	quotes: none;
-}
-blockquote:before, blockquote:after,
-q:before, q:after {
-	content: '';
-	content: none;
-}
-table {
-	border-collapse: collapse;
-	border-spacing: 0;
-}
\ No newline at end of file
diff --git a/doc/manual_src/style.css b/doc/manual_src/style.css
deleted file mode 100644
index e18fae3..0000000
--- a/doc/manual_src/style.css
+++ /dev/null
@@ -1,345 +0,0 @@
-
-
-/* Layout */
-.wrap {
-  width: 60%;
-  margin: 0 auto;
-}
-
-/* Global */
-body {
-   font-family: "HelveticaNeue-Light", "Helvetica Neue Light", "Helvetica Neue", Helvetica, Arial, "Lucida Grande", sans-serif; 
-   font-weight: 300;
-   color: #2C2C2C;
-}
-#content p {
-  font-size: 1em;
-  line-height: 1.125em;
-}
-  /* Header */
-  header {
-    background: #366689;
-    height: 45px;
-  }
-  #logo {
-    display: inline-block;
-    margin-top: 8px;
-    float: left;
-    margin-right: 10px;
-  }
-  header h2,
-  .interior header h2 {
-    font-weight: 300;
-    color: white;
-    padding-top: 10px;
-    font-size: 1.4375em;
-    float: left;
-  }
-    /* Navigation */
-    nav#primary {
-      float: right;
-      margin-top: 8px;
-    }
-      nav#primary ul {
-        margin-right: 70px;
-      }
-        nav#primary ul li {
-          display: inline-block;
-          margin-left: 10px;
-          padding-left: 10px;
-          border-left: 1px solid #fff;
-        }
-          nav#primary ul li:first-child {
-            margin-left: 0;
-            padding-left: 0;
-            border-left: none;
-          }
-          nav#primary ul li a {
-            font-size: 0.875em;
-            text-decoration: none;
-            color: white;
-          }
-
-  /* Footer */
-  footer {
-    clear: both;
-    margin-top: 120px;
-    padding-top: 20px;
-    background: #366689;
-    min-height: 150px;
-    color: white;
-  }
-  footer p {
-    float: right;
-  }
-  footer nav {
-    float: left;
-  }
-  footer nav ul li a {
-    color: white;
-    text-decoration: none;
-    font-size: 0.875em;
-  }
-
-a.button {
-  border: 2px solid #618200;
-  background:#8ea548;
-  -webkit-border-radius: 6px;
-  border-radius: 6px;
-  -webkit-box-shadow: inset 0px 0px 12px 1px rgba(150, 150, 155, .75);
-  box-shadow: inset 0px 0px 12px 1px rgba(150, 150, 155, .75);
-  text-shadow: 1px 1px 1px #628200;
-  filter: dropshadow(color=#628200, offx=1, offy=1);
-  color: white;
-  font-size: 1.5em;
-  text-decoration: none;
-  padding:20px;
-  width: 300px;
-  display: inline-block;
-  text-align: center;
-  margin: 25px 12px;
-}
-p + p,
-p + ul,
-p + a,
-p + h2,
-p + h3,
-p + h4,
-p + img,
-ul + img,
-ol + img,
-ul + div,
-ol + div,
-ul + p,
-ul + h2,
-ul + h3,
-ul + h4,
-ol + p {
-  margin-top: 1em;
-}
-li + li {
-  margin-top: 0.5em;
-}
-a, a:visited {
-  color: #d73f27;
-}
-a:hover {
-  color: #aa2f1b;
-}
-h2{}
-h3{}
-h4{}
-em {font-style: italic;}
-strong {font-weight: 600;}
-
-
-.clearfix {clear:both;}
-
-
-.title {
-
-}
-
-/* Landing Page Styles */
-#content .download {
-  background: #e1e1e1;
-  border: 1px solid #cacaca;
-  -webkit-box-shadow: inset 0px 0px 10px 1px rgba(150, 150, 155, .5);
-  box-shadow: inset 0px 0px 10px 1px rgba(150, 150, 155, .5);
-  text-align: center;
-  padding: 45px 0;
-}
-#content .download h1 {
-  font-weight: 600;
-  font-size: 5.9375em;
-}
-#content .download h1 a {
-  color: #2c2c2c;
-  text-decoration: none;
-}
-#content .download h1 small {
-  font-size: 0.252631578947368em;
-  font-weight: 300;
-  display: block;
-  font-style: italic;
-  line-height: .75em;
-}
-#content .download h2 {
-  font-size: 2.1875em;
-  margin-top: 20px;
-}
-#content .download p {
-  font-size: 1.5em;
-  line-height: 1.25em;
-}
-#content .download pre {
-  background: #2c2c2c;
-  padding: 5px;
-  color: white;
-  font: normal 1em/1em "Lucida Console", "Courier New", Courier, monospace;
-  display: block;
-  max-width: 60%;
-  text-align: left;
-  margin: 0 auto;
-  -webkit-border-radius: 2px;
-  margin-top: 25px;
-  border-radius: 2px;
-}
-.column {
-  width: 31%;
-  float: left;
-  margin-top: 40px;
-  border-left: 1px solid #d7d7d9;
-  padding-left: 2%;
-  margin-right: .3%;
-}
-.column:last-of-type {
-  margin-right: 0;
-}
-.column h2 {
-  font-size: 1.5em;
-  margin-bottom: .75em;
-}
-
-
-
-
-
-/* Interior Page Styles */
-
-/* Subnav */
-.subnav {
-  width: 100%;
-  background: #e1e1e1;
-}
-  .interior .subnav ul {
-    width: 90%;
-    max-width: 90%;
-    margin: 0 auto;
-    padding: 15px 0;
-  }
-    .subnav ul li {
-      display: inline;
-      padding: 0 7px;
-      border-right: 2px solid #2c2c2c;
-    }
-      .subnav ul li:last-of-type {
-        border-right: none;
-      }
-      .subnav ul li a {
-        color: #2c2c2c;
-        font-weight: 600;
-        font-size: 0.875em;
-        text-decoration: none;
-        text-transform: uppercase;
-      }
-        .subnav ul li a:hover {
-          text-decoration: underline;
-        }
-
-.interior .title {
-  font-size: 5.9375em;
-  font-weight: 600;
-  text-align: center;
-  margin: 45px 0;
-}
-
-.interior h1 {
-  font-size: 2.625em;
-  margin-bottom: 0.5em;
-  margin-top: 1em;
-}
-
-.interior h2 {
-  font-size: 2.125em;
-  margin-bottom: 0.5em;
-}
-.interior h3 {
-  font-size: 1.5em;
-  margin-bottom: 0.75em;
-  font-weight: 600;
-}
-.interior h4 {
-  font-size: 1em;
-  margin-bottom: 1em;
-  text-transform: uppercase;
-}
-
-.interior #content .wrap > p {
-  line-height: 1.25em;
-  max-width: 80%;
-}
-.interior ul,
-.interior ol {
-  max-width: 80%;
-}
-.interior .figure,
-.interior figure {
-  background: #e1e1e1;
-  padding: 10px;
-  display: inline-block;
-  -webkit-border-radius: 2px;
-  border-radius: 2px;
-}
-.interior code {
-  font-family: Consolas, monospace;
-}
-.interior pre {
-  border-top: 1px solid #E1E1E1;
-  padding: 25px;
-  display: inline-block;
-  border-bottom: 1px solid #E1E1E1;
-  margin: 25px 0;
-  /*background: url(images/code-tag.png) right 5px no-repeat; */
-}
-figure,
-.figure + .figure,
-.figure + p,
-.figure + ul,
-.figure + ol,
-.figure + h2,
-.figure + h3,
-.figure + h4,
-p + .figure,
-ul + .figure,
-ol + .figure,
-.figure + h2,
-.figure + h3,
-.figure + h4,
-pre + p,
-pre + h2,
-pre + h3,
-pre + h4,
-p + pre,
-h2 + pre,
-h3 + pre,
-h4 + pre {
-  margin-top: 1em;
-}
-figure img, .figure img {
-  max-width: 100%;
-  height: auto;
-}
-figcaption, .caption {
-  font-size: 0.875em;
-  font-weight: 600;
-  padding-top: 10px;
-}
-
-#content li {
-  font-weight: 600;
-  padding-left: 1em;
-  list-style: square inside;
-}
-
-ul.steps li {
-  color: #366689;
-  font-weight: 600;
-  padding-left: 1em;
-  list-style: square inside;
-}
-
-
-
-
-