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What steps will reproduce the problem?
~$ mkdir testannex
~$ cd testannex/
testannex$ git init
Initialized empty Git repository in /Users/ed/testannex/.git/
testannex$ git annex init "test annex"
init test annex ok
(Recording state in git...)
testannex$ echo "file1" > file1
testannex$ git annex add file1
add file1 (checksum...) ok
(Recording state in git...)
testannex$ mkdir directory
testannex$ mv file1 directory/
testannex$ cat directory/file1
cat: directory/file1: No such file or directory
testannex$ git annex fix directory/file1
git-annex: directory/file1 not found
What is the expected output? What do you see instead?
git annex fix should fix the symlink. It looks like maybe it's *following* the symlink?
What version of git-annex are you using? On what operating system?
checkout: 20d195f compiled on OS X 10.7 using cabal.
Please provide any additional information below.
git annex assistant is not noticing file renames either.
> git-annex commands (other than `git annex add`) only operate on files
> checked into git, which `directory/file1` is not, since you did not use
> `git mv`. Once you `git add` the file, it'll work. [[done]] --[[Joey]]
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