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What steps will reproduce the problem?
Since syncing of non-git-annex repositories was enabled (thanks!), I see error messages
conq: invalid command syntax.
in the output of git annex sync (and in the logs of the webapp), which I am fairly sure is an error from bitbucket, which I am using as the centralised repository. I know a similar thing has been reported before ([[conq:_invalid_command_syntax]]), but I really don't know how to tackle this. I have included the output from git annex sync --debug, and the ssh command which is causing this, at the end.
If I strip out all the options from the ssh command, I get the same error. I don't know if this is some peculiarity from bitbucket, or a more general issue.
Also, I don't know if this is even a problem. The syncing does seem to work properly.
--Walter
**edit** I have tried with another centralised annex-less git server, and the behaviour is better (more logs below). It realises that it doesn't have annex, modifies .git/config, and then afterwards doesn't try to run the problematic command. So, my first guess is that it isn't correctly determining that that command failed in some cases?
What version of git-annex are you using? On what operating system?
4.20130423-ge0f5abb, Ubuntu 12.10
Please provide any additional information below.
[[!format sh """
~/annex$ git annex sync --debug
[2013-04-24 10:21:39 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","symbolic-ref","HEAD"]
[2013-04-24 10:21:39 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","show-ref","refs/heads/master"]
[2013-04-24 10:21:39 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","show-ref","git-annex"]
[2013-04-24 10:21:39 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","show-ref","--hash","refs/heads/git-annex"]
[2013-04-24 10:21:39 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","log","refs/heads/git-annex..44700457a651992eb40ff67a148d77217e8aa1d7","--oneline","-n1"]
[2013-04-24 10:21:39 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","log","refs/heads/git-annex..94392bcdad74257adaadb98ce85d17a83da7648c","--oneline","-n1"]
[2013-04-24 10:21:39 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","log","refs/heads/git-annex..ff126032854d9ead0a096acae04f105628de0cc4","--oneline","-n1"]
[2013-04-24 10:21:39 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","log","refs/heads/git-annex..62da8e99021b72a9255064385a75c5fe643e3711","--oneline","-n1"]
[2013-04-24 10:21:39 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","log","refs/heads/git-annex..00cca957c30882c9dfaf494101251e4c634baa31","--oneline","-n1"]
[2013-04-24 10:21:39 NZST] chat: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","cat-file","--batch"]
[2013-04-24 10:21:39 NZST] read: git ["config","--null","--list"]
[2013-04-24 10:21:39 NZST] read: ssh ["-S","/home/walter/annex/.git/annex/ssh/git@bitbucket.org","-o","ControlMaster=auto","-o","ControlPersist=yes","-T","git@bitbucket.org","git-annex-shell 'configlist' '/~/waltersom/annex.git'"]
conq: invalid command syntax.
[2013-04-24 10:21:39 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","ls-files","--others","--exclude-standard","--stage","-z","--","/home/walter/annex"]
commit
[2013-04-24 10:21:39 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","commit","-m","git-annex automatic sync"]
ok
[2013-04-24 10:21:39 NZST] call: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","show-ref","--verify","-q","refs/heads/synced/master"]
[2013-04-24 10:21:39 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","log","refs/heads/master..refs/heads/synced/master","--oneline","-n1"]
pull bitbucket
[2013-04-24 10:21:39 NZST] call: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","fetch","bitbucket"]
[2013-04-24 10:21:43 NZST] call: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","show-ref","--verify","-q","refs/remotes/bitbucket/master"]
[2013-04-24 10:21:43 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","log","refs/heads/master..refs/remotes/bitbucket/master","--oneline","-n1"]
[2013-04-24 10:21:43 NZST] call: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","show-ref","--verify","-q","refs/remotes/bitbucket/synced/master"]
[2013-04-24 10:21:43 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","log","refs/heads/synced/master..refs/remotes/bitbucket/synced/master","--oneline","-n1"]
ok
[2013-04-24 10:21:43 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","show-ref","git-annex"]
[2013-04-24 10:21:43 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","show-ref","--hash","refs/heads/git-annex"]
[2013-04-24 10:21:43 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","log","refs/heads/git-annex..44700457a651992eb40ff67a148d77217e8aa1d7","--oneline","-n1"]
[2013-04-24 10:21:43 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","log","refs/heads/git-annex..94392bcdad74257adaadb98ce85d17a83da7648c","--oneline","-n1"]
[2013-04-24 10:21:43 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","log","refs/heads/git-annex..ff126032854d9ead0a096acae04f105628de0cc4","--oneline","-n1"]
[2013-04-24 10:21:43 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","log","refs/heads/git-annex..62da8e99021b72a9255064385a75c5fe643e3711","--oneline","-n1"]
[2013-04-24 10:21:43 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","log","refs/heads/git-annex..00cca957c30882c9dfaf494101251e4c634baa31","--oneline","-n1"]
[2013-04-24 10:21:43 NZST] call: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","branch","-f","synced/master"]
[2013-04-24 10:21:43 NZST] call: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","show-ref","--verify","-q","refs/remotes/bitbucket/synced/master"]
[2013-04-24 10:21:43 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","log","refs/remotes/bitbucket/synced/master..refs/heads/synced/master","--oneline","-n1"]
[2013-04-24 10:21:43 NZST] call: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","show-ref","--verify","-q","refs/remotes/bitbucket/git-annex"]
[2013-04-24 10:21:43 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","log","refs/remotes/bitbucket/git-annex..git-annex","--oneline","-n1"]
push bitbucket
[2013-04-24 10:21:43 NZST] call: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","push","bitbucket","git-annex:synced/git-annex","master:synced/master"]
Everything up-to-date
ok
"""]]
[[!format sh """
~/annex$ ssh -vvv -S /home/walter/annex/.git/annex/ssh/git@bitbucket.org -o ControlMaster=auto -o ControlPersist=yes -T git@bitbucket.org git-annex-shell 'configlist' '/~/waltersom/annex.git'
OpenSSH_6.0p1 Debian-3ubuntu1, OpenSSL 1.0.1c 10 May 2012
debug1: Reading configuration data /etc/ssh/ssh_config
debug1: /etc/ssh/ssh_config line 19: Applying options for *
debug1: auto-mux: Trying existing master
debug2: fd 3 setting O_NONBLOCK
debug2: mux_client_hello_exchange: master version 4
debug3: mux_client_forwards: request forwardings: 0 local, 0 remote
debug3: mux_client_request_session: entering
debug3: mux_client_request_alive: entering
debug3: mux_client_request_alive: done pid = 5213
debug3: mux_client_request_session: session request sent
debug1: mux_client_request_session: master session id: 2
conq: invalid command syntax.
debug3: mux_client_read_packet: read header failed: Broken pipe
debug2: Received exit status from master 0
"""]]
Here is the output once I added another (non-bitbucket) repository, also without git-annex-shell
[[!format sh """
~/annex$ git annex sync --debug
[2013-04-24 10:56:20 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","symbolic-ref","HEAD"]
[2013-04-24 10:56:20 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","show-ref","refs/heads/master"]
[2013-04-24 10:56:20 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","show-ref","git-annex"]
[2013-04-24 10:56:20 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","show-ref","--hash","refs/heads/git-annex"]
[2013-04-24 10:56:20 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","log","refs/heads/git-annex..44700457a651992eb40ff67a148d77217e8aa1d7","--oneline","-n1"]
[2013-04-24 10:56:20 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","log","refs/heads/git-annex..94392bcdad74257adaadb98ce85d17a83da7648c","--oneline","-n1"]
[2013-04-24 10:56:20 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","log","refs/heads/git-annex..ff126032854d9ead0a096acae04f105628de0cc4","--oneline","-n1"]
[2013-04-24 10:56:20 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","log","refs/heads/git-annex..62da8e99021b72a9255064385a75c5fe643e3711","--oneline","-n1"]
[2013-04-24 10:56:20 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","log","refs/heads/git-annex..00cca957c30882c9dfaf494101251e4c634baa31","--oneline","-n1"]
[2013-04-24 10:56:20 NZST] chat: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","cat-file","--batch"]
[2013-04-24 10:56:20 NZST] read: git ["config","--null","--list"]
[2013-04-24 10:56:20 NZST] read: ssh ["-S","/home/walter/annex/.git/annex/ssh/waltersom_aaatos@ssh.phx.nearlyfreespeech.net","-o","ControlMaster=auto","-o","ControlPersist=yes","-T","waltersom_aaatos@ssh.phx.nearlyfreespeech.net","git-annex-shell 'configlist' '/home/protected/gitroot/test.git'"]
waltersom_aaatos@ssh.phx.nearlyfreespeech.net's password:
-bash: git-annex-shell: command not found
[2013-04-24 10:56:25 NZST] call: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","fetch","--quiet","aaatos"]
waltersom_aaatos@ssh.phx.nearlyfreespeech.net's password:
Remote aaatos does not have git-annex installed; setting remote.aaatos.annex-ignore
[2013-04-24 10:56:30 NZST] call: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","config","remote.aaatos.annex-ignore","true"]
[2013-04-24 10:56:30 NZST] read: ssh ["-S","/home/walter/annex/.git/annex/ssh/git@bitbucket.org","-o","ControlMaster=auto","-o","ControlPersist=yes","-T","git@bitbucket.org","git-annex-shell 'configlist' '/~/waltersom/annex.git'"]
conq: invalid command syntax.
[2013-04-24 10:56:30 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","ls-files","--others","--exclude-standard","--stage","-z","--","/home/walter/annex"]
commit
[2013-04-24 10:56:30 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","commit","-m","git-annex automatic sync"]
ok
[2013-04-24 10:56:30 NZST] call: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","show-ref","--verify","-q","refs/heads/synced/master"]
[2013-04-24 10:56:30 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","log","refs/heads/master..refs/heads/synced/master","--oneline","-n1"]
pull bitbucket
[2013-04-24 10:56:30 NZST] call: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","fetch","bitbucket"]
[2013-04-24 10:56:34 NZST] call: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","show-ref","--verify","-q","refs/remotes/bitbucket/master"]
[2013-04-24 10:56:34 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","log","refs/heads/master..refs/remotes/bitbucket/master","--oneline","-n1"]
[2013-04-24 10:56:34 NZST] call: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","show-ref","--verify","-q","refs/remotes/bitbucket/synced/master"]
[2013-04-24 10:56:35 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","log","refs/heads/synced/master..refs/remotes/bitbucket/synced/master","--oneline","-n1"]
ok
pull aaatos
[2013-04-24 10:56:35 NZST] call: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","fetch","aaatos"]
waltersom_aaatos@ssh.phx.nearlyfreespeech.net's password:
[2013-04-24 10:56:40 NZST] call: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","show-ref","--verify","-q","refs/remotes/aaatos/master"]
[2013-04-24 10:56:40 NZST] call: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","show-ref","--verify","-q","refs/remotes/aaatos/synced/master"]
[2013-04-24 10:56:40 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","log","refs/heads/synced/master..refs/remotes/aaatos/synced/master","--oneline","-n1"]
ok
[2013-04-24 10:56:40 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","show-ref","git-annex"]
[2013-04-24 10:56:40 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","show-ref","--hash","refs/heads/git-annex"]
[2013-04-24 10:56:40 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","log","refs/heads/git-annex..44700457a651992eb40ff67a148d77217e8aa1d7","--oneline","-n1"]
[2013-04-24 10:56:40 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","log","refs/heads/git-annex..94392bcdad74257adaadb98ce85d17a83da7648c","--oneline","-n1"]
[2013-04-24 10:56:40 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","log","refs/heads/git-annex..ff126032854d9ead0a096acae04f105628de0cc4","--oneline","-n1"]
[2013-04-24 10:56:40 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","log","refs/heads/git-annex..62da8e99021b72a9255064385a75c5fe643e3711","--oneline","-n1"]
[2013-04-24 10:56:40 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","log","refs/heads/git-annex..00cca957c30882c9dfaf494101251e4c634baa31","--oneline","-n1"]
[2013-04-24 10:56:40 NZST] call: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","branch","-f","synced/master"]
[2013-04-24 10:56:40 NZST] call: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","show-ref","--verify","-q","refs/remotes/bitbucket/synced/master"]
[2013-04-24 10:56:40 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","log","refs/remotes/bitbucket/synced/master..refs/heads/synced/master","--oneline","-n1"]
[2013-04-24 10:56:40 NZST] call: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","show-ref","--verify","-q","refs/remotes/bitbucket/git-annex"]
[2013-04-24 10:56:40 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","log","refs/remotes/bitbucket/git-annex..git-annex","--oneline","-n1"]
push bitbucket
[2013-04-24 10:56:40 NZST] call: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","push","bitbucket","git-annex:synced/git-annex","master:synced/master"]
Everything up-to-date
ok
[2013-04-24 10:56:44 NZST] call: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","show-ref","--verify","-q","refs/remotes/aaatos/synced/master"]
[2013-04-24 10:56:44 NZST] read: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","log","refs/remotes/aaatos/synced/master..refs/heads/synced/master","--oneline","-n1"]
[2013-04-24 10:56:44 NZST] call: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","show-ref","--verify","-q","refs/remotes/aaatos/git-annex"]
push aaatos
[2013-04-24 10:56:44 NZST] call: git ["--git-dir=/home/walter/annex/.git","--work-tree=/home/walter/annex","push","aaatos","git-annex:synced/git-annex","master:synced/master"]
waltersom_aaatos@ssh.phx.nearlyfreespeech.net's password:
Counting objects: 1363, done.
Delta compression using up to 8 threads.
Compressing objects: 100% (604/604), done.
Writing objects: 100% (1363/1363), 96.41 KiB, done.
Total 1363 (delta 709), reused 898 (delta 467)
To waltersom_aaatos@ssh.phx.nearlyfreespeech.net:/home/protected/gitroot/test.git
* [new branch] git-annex -> synced/git-annex
* [new branch] master -> synced/master
ok
[2013-04-24 10:56:50 NZST] read: ssh ["-O","stop","-S","/home/walter/annex/.git/annex/ssh/waltersom_aaatos@ssh.phx.nearlyfreespeech.net","-o","ControlMaster=auto","-o","ControlPersist=yes","waltersom_aaatos@ssh.phx.nearlyfreespeech.net"]
"""]]
Here is the contents of .git/config (the last line was added by git annex sync)
[[!format sh """
[core]
repositoryformatversion = 0
filemode = true
bare = false
logallrefupdates = true
[annex]
uuid = ef94eb2c-ebce-4419-900b-937c88df9aa1
version = 3
direct = true
diskreserve = 1 gigabyte
numcopies = 1
autocommit = true
[gc]
auto = 0
[remote "S3Sydney"]
annex-s3 = true
annex-uuid = 004d3b86-43db-4d82-9dec-347bc1b86420
[remote "327D522A6727FE79"]
url = /media/walter/327D522A6727FE79/annex
fetch = +refs/heads/*:refs/remotes/327D522A6727FE79/*
annex-uuid = c9fe9266-3581-4608-aa3c-9322afd9b533
annex-cost = 125.0
annex-sync = true
[remote "bitbucket"]
url = git@bitbucket.org:waltersom/annex.git
fetch = +refs/heads/*:refs/remotes/bitbucket/*
[remote "aaatos"]
url = waltersom_aaatos@ssh.phx.nearlyfreespeech.net:/home/protected/gitroot/test.git
fetch = +refs/heads/*:refs/remotes/aaatos/*
annex-ignore = true
"""]]
> Reproduced and fixed. [[done]] --[[Joey]]
|
