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[[!comment format=mdwn
username="thowz"
subject="reinject files"
date="2016-05-04T00:52:38Z"
content="""
Here's a way to put files into their proper case-sensitive folders using `git-annex reinject --known`:
# Enable write permissions on directories containing misfiled items
chmod u+w `find -xtype l -printf \"%l\n\" | sed -r \"s/.*(\.git\/annex\/objects\/)[^\/]*\/[^\/]*\/([^\/]*).*/\1*\/*\/\2/\" | sort | uniq`
# Reinject those files into the annex
git-annex reinject --known `find -xtype l -printf \"%l\n\" | sed -r \"s/.*(\.git\/annex\/objects\/)[^\/]*\/[^\/]*\/([^\/]*.*)/\1*\/*\/\2/\" | sort | uniq`
# Remove empty directories (rmdir will fail on the non-empty directories)
find .git/annex/objects -mindepth 3 -maxdepth 3 -type d -exec rmdir {} \;
find .git/annex/objects -mindepth 2 -maxdepth 2 -type d -exec rmdir {} \;
"""]]
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