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[[!comment format=mdwn
 username="http://joeyh.name/"
 ip="209.250.56.47"
 subject="comment 1"
 date="2013-10-28T22:02:30Z"
 content="""
So this sounds like [[bugs/direct_mode_assistant_in_subdir_confusion]], which was fixed in 4.20131024. Is there a possibility that you started the git-annex assistant (or webapp) from within `incoming/5d` ?

I'm not sure if the bug could also cause the removal of directories to happen in the wrong location.


----

It should be possible to revert these changes and get your files back.

1. `git annex indirect`
2. `git log --stat` (find the commit that deleted files)
3. `git revert $commit`
4. `git annex direct`
"""]]