1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
|
{- git-annex command
-
- Copyright 2010, 2013 Joey Hess <id@joeyh.name>
-
- Licensed under the GNU GPL version 3 or higher.
-}
{-# LANGUAGE CPP #-}
module Command.Add where
import Common.Annex
import Command
import Types.KeySource
import Backend
import Logs.Location
import Annex.Content
import Annex.Content.Direct
import Annex.Perms
import Annex.Link
import Annex.MetaData
import qualified Annex
import qualified Annex.Queue
#ifdef WITH_CLIBS
#ifndef __ANDROID__
import Utility.Touch
#endif
#endif
import Config
import Utility.InodeCache
import Annex.FileMatcher
import Annex.ReplaceFile
import Utility.Tmp
import Utility.CopyFile
import Annex.InodeSentinal
import Annex.Version
import Control.Exception (IOException)
cmd :: Command
cmd = notBareRepo $ withGlobalOptions (jobsOption : fileMatchingOptions) $
command "add" SectionCommon "add files to annex"
paramPaths (seek <$$> optParser)
data AddOptions = AddOptions
{ addThese :: CmdParams
, includeDotFiles :: Bool
}
optParser :: CmdParamsDesc -> Parser AddOptions
optParser desc = AddOptions
<$> cmdParams desc
<*> switch
( long "include-dotfiles"
<> help "don't skip dotfiles"
)
{- Add acts on both files not checked into git yet, and unlocked files.
-
- In direct mode, it acts on any files that have changed. -}
seek :: AddOptions -> CommandSeek
seek o = allowConcurrentOutput $ do
matcher <- largeFilesMatcher
let go a = flip a (addThese o) $ \file -> ifM (checkFileMatcher matcher file <||> Annex.getState Annex.force)
( start file
, startSmall file
)
go $ withFilesNotInGit (not $ includeDotFiles o)
ifM (versionSupportsUnlockedPointers <||> isDirect)
( go withFilesMaybeModified
, go withFilesOldUnlocked
)
{- Pass file off to git-add. -}
startSmall :: FilePath -> CommandStart
startSmall file = do
showStart "add" file
next $ next $ addSmall file
addSmall :: FilePath -> Annex Bool
addSmall file = do
showNote "non-large file; adding content to git repository"
addFile file
addFile :: FilePath -> Annex Bool
addFile file = do
ps <- forceParams
Annex.Queue.addCommand "add" (ps++[Param "--"]) [file]
return True
{- The add subcommand annexes a file, generating a key for it using a
- backend, and then moving it into the annex directory and setting up
- the symlink pointing to its content. -}
start :: FilePath -> CommandStart
start file = ifAnnexed file addpresent add
where
add = do
ms <- liftIO $ catchMaybeIO $ getSymbolicLinkStatus file
case ms of
Nothing -> stop
Just s
| not (isRegularFile s) && not (isSymbolicLink s) -> stop
| otherwise -> do
showStart "add" file
next $ if isSymbolicLink s
then next $ addFile file
else perform file
addpresent key = ifM isDirect
( do
ms <- liftIO $ catchMaybeIO $ getSymbolicLinkStatus file
case ms of
Just s | isSymbolicLink s -> fixup key
_ -> ifM (goodContent key file) ( stop , add )
, fixup key
)
fixup key = do
-- the annexed symlink is present but not yet added to git
showStart "add" file
liftIO $ removeFile file
whenM isDirect $
void $ addAssociatedFile key file
next $ next $ cleanup file key Nothing =<< inAnnex key
{- The file that's being added is locked down before a key is generated,
- to prevent it from being modified in between. This lock down is not
- perfect at best (and pretty weak at worst). For example, it does not
- guard against files that are already opened for write by another process.
- So a KeySource is returned. Its inodeCache can be used to detect any
- changes that might be made to the file after it was locked down.
-
- When possible, the file is hard linked to a temp directory. This guards
- against some changes, like deletion or overwrite of the file, and
- allows lsof checks to be done more efficiently when adding a lot of files.
-
- Lockdown can fail if a file gets deleted, and Nothing will be returned.
-}
lockDown :: FilePath -> Annex (Maybe KeySource)
lockDown = either
(\e -> warning (show e) >> return Nothing)
(return . Just)
<=< lockDown'
lockDown' :: FilePath -> Annex (Either IOException KeySource)
lockDown' file = ifM crippledFileSystem
( withTSDelta $ liftIO . tryIO . nohardlink
, tryIO $ do
tmp <- fromRepo gitAnnexTmpMiscDir
createAnnexDirectory tmp
go tmp
)
where
{- In indirect mode, the write bit is removed from the file as part
- of lock down to guard against further writes, and because objects
- in the annex have their write bit disabled anyway.
-
- Freezing the content early also lets us fail early when
- someone else owns the file.
-
- This is not done in direct mode, because files there need to
- remain writable at all times.
-}
go tmp = do
unlessM isDirect $
freezeContent file
withTSDelta $ \delta -> liftIO $ do
(tmpfile, h) <- openTempFile tmp $
relatedTemplate $ takeFileName file
hClose h
nukeFile tmpfile
withhardlink delta tmpfile `catchIO` const (nohardlink delta)
nohardlink delta = do
cache <- genInodeCache file delta
return KeySource
{ keyFilename = file
, contentLocation = file
, inodeCache = cache
}
withhardlink delta tmpfile = do
createLink file tmpfile
cache <- genInodeCache tmpfile delta
return KeySource
{ keyFilename = file
, contentLocation = tmpfile
, inodeCache = cache
}
{- Ingests a locked down file into the annex.
-
- In direct mode, leaves the file alone, and just updates bookkeeping
- information.
-}
ingest :: Maybe KeySource -> Annex (Maybe Key, Maybe InodeCache)
ingest Nothing = return (Nothing, Nothing)
ingest (Just source) = withTSDelta $ \delta -> do
backend <- chooseBackend $ keyFilename source
k <- genKey source backend
let src = contentLocation source
ms <- liftIO $ catchMaybeIO $ getFileStatus src
mcache <- maybe (pure Nothing) (liftIO . toInodeCache delta src) ms
case (mcache, inodeCache source) of
(_, Nothing) -> go k mcache ms
(Just newc, Just c) | compareStrong c newc -> go k mcache ms
_ -> failure "changed while it was being added"
where
go k mcache ms = ifM isDirect
( godirect k mcache ms
, goindirect k mcache ms
)
goindirect (Just (key, _)) mcache ms = do
catchNonAsync (moveAnnex key $ contentLocation source)
(undo (keyFilename source) key)
maybe noop (genMetaData key (keyFilename source)) ms
liftIO $ nukeFile $ keyFilename source
return (Just key, mcache)
goindirect _ _ _ = failure "failed to generate a key"
godirect (Just (key, _)) (Just cache) ms = do
addInodeCache key cache
maybe noop (genMetaData key (keyFilename source)) ms
finishIngestDirect key source
return (Just key, Just cache)
godirect _ _ _ = failure "failed to generate a key"
failure msg = do
warning $ keyFilename source ++ " " ++ msg
when (contentLocation source /= keyFilename source) $
liftIO $ nukeFile $ contentLocation source
return (Nothing, Nothing)
finishIngestDirect :: Key -> KeySource -> Annex ()
finishIngestDirect key source = do
void $ addAssociatedFile key $ keyFilename source
when (contentLocation source /= keyFilename source) $
liftIO $ nukeFile $ contentLocation source
{- Copy to any other locations using the same key. -}
otherfs <- filter (/= keyFilename source) <$> associatedFiles key
forM_ otherfs $
addContentWhenNotPresent key (keyFilename source)
perform :: FilePath -> CommandPerform
perform file = lockDown file >>= ingest >>= go
where
go (Just key, cache) = next $ cleanup file key cache True
go (Nothing, _) = stop
{- On error, put the file back so it doesn't seem to have vanished.
- This can be called before or after the symlink is in place. -}
undo :: FilePath -> Key -> SomeException -> Annex a
undo file key e = do
whenM (inAnnex key) $ do
liftIO $ nukeFile file
-- The key could be used by other files too, so leave the
-- content in the annex, and make a copy back to the file.
obj <- calcRepo $ gitAnnexLocation key
unlessM (liftIO $ copyFileExternal CopyTimeStamps obj file) $
warning $ "Unable to restore content of " ++ file ++ "; it should be located in " ++ obj
thawContent file
throwM e
{- Creates the symlink to the annexed content, returns the link target. -}
link :: FilePath -> Key -> Maybe InodeCache -> Annex String
link file key mcache = flip catchNonAsync (undo file key) $ do
l <- calcRepo $ gitAnnexLink file key
replaceFile file $ makeAnnexLink l
-- touch symlink to have same time as the original file,
-- as provided in the InodeCache
case mcache of
#if defined(WITH_CLIBS) && ! defined(__ANDROID__)
Just c -> liftIO $ touch file (TimeSpec $ inodeCacheToMtime c) False
#else
Just _ -> noop
#endif
Nothing -> noop
return l
{- Creates the symlink to the annexed content, and stages it in git.
-
- As long as the filesystem supports symlinks, we use
- git add, rather than directly staging the symlink to git.
- Using git add is best because it allows the queuing to work
- and is faster (staging the symlink runs hash-object commands each time).
- Also, using git add allows it to skip gitignored files, unless forced
- to include them.
-}
addLink :: FilePath -> Key -> Maybe InodeCache -> Annex ()
addLink file key mcache = ifM (coreSymlinks <$> Annex.getGitConfig)
( do
_ <- link file key mcache
ps <- forceParams
Annex.Queue.addCommand "add" (ps++[Param "--"]) [file]
, do
l <- link file key mcache
addAnnexLink l file
)
forceParams :: Annex [CommandParam]
forceParams = ifM (Annex.getState Annex.force)
( return [Param "-f"]
, return []
)
cleanup :: FilePath -> Key -> Maybe InodeCache -> Bool -> CommandCleanup
cleanup file key mcache hascontent = do
ifM (isDirect <&&> pure hascontent)
( do
l <- calcRepo $ gitAnnexLink file key
stageSymlink file =<< hashSymlink l
, addLink file key mcache
)
when hascontent $
logStatus key InfoPresent
return True
|