1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
|
{- management of the git-annex branch
-
- Copyright 2011-2013 Joey Hess <id@joeyh.name>
-
- Licensed under the GNU GPL version 3 or higher.
-}
module Annex.Branch (
fullname,
name,
hasOrigin,
hasSibling,
siblingBranches,
create,
update,
forceUpdate,
updateTo,
get,
getHistorical,
change,
maybeChange,
commit,
forceCommit,
files,
withIndex,
performTransitions,
) where
import qualified Data.ByteString.Lazy as L
import qualified Data.Set as S
import qualified Data.Map as M
import Data.Bits.Utils
import Control.Concurrent (threadDelay)
import Common.Annex
import Annex.BranchState
import Annex.Journal
import Annex.Index
import qualified Git
import qualified Git.Command
import qualified Git.Ref
import qualified Git.RefLog
import qualified Git.Sha
import qualified Git.Branch
import qualified Git.UnionMerge
import qualified Git.UpdateIndex
import Git.LsTree (lsTreeParams)
import Git.HashObject
import Git.Types
import Git.FilePath
import Annex.CatFile
import Annex.Perms
import Logs
import Logs.Transitions
import Logs.Trust.Pure
import Logs.Difference.Pure
import Annex.ReplaceFile
import qualified Annex.Queue
import Annex.Branch.Transitions
import qualified Annex
import Annex.Hook
{- Name of the branch that is used to store git-annex's information. -}
name :: Git.Ref
name = Git.Ref "git-annex"
{- Fully qualified name of the branch. -}
fullname :: Git.Ref
fullname = Git.Ref $ "refs/heads/" ++ fromRef name
{- Branch's name in origin. -}
originname :: Git.Ref
originname = Git.Ref $ "origin/" ++ fromRef name
{- Does origin/git-annex exist? -}
hasOrigin :: Annex Bool
hasOrigin = inRepo $ Git.Ref.exists originname
{- Does the git-annex branch or a sibling foo/git-annex branch exist? -}
hasSibling :: Annex Bool
hasSibling = not . null <$> siblingBranches
{- List of git-annex (refs, branches), including the main one and any
- from remotes. Duplicate refs are filtered out. -}
siblingBranches :: Annex [(Git.Ref, Git.Branch)]
siblingBranches = inRepo $ Git.Ref.matchingUniq [name]
{- Creates the branch, if it does not already exist. -}
create :: Annex ()
create = void getBranch
{- Returns the ref of the branch, creating it first if necessary. -}
getBranch :: Annex Git.Ref
getBranch = maybe (hasOrigin >>= go >>= use) return =<< branchsha
where
go True = do
inRepo $ Git.Command.run
[Param "branch", Param $ fromRef name, Param $ fromRef originname]
fromMaybe (error $ "failed to create " ++ fromRef name)
<$> branchsha
go False = withIndex' True $
inRepo $ Git.Branch.commitAlways Git.Branch.AutomaticCommit "branch created" fullname []
use sha = do
setIndexSha sha
return sha
branchsha = inRepo $ Git.Ref.sha fullname
{- Ensures that the branch and index are up-to-date; should be
- called before data is read from it. Runs only once per git-annex run. -}
update :: Annex ()
update = runUpdateOnce $ void $ updateTo =<< siblingBranches
{- Forces an update even if one has already been run. -}
forceUpdate :: Annex Bool
forceUpdate = updateTo =<< siblingBranches
{- Merges the specified Refs into the index, if they have any changes not
- already in it. The Branch names are only used in the commit message;
- it's even possible that the provided Branches have not been updated to
- point to the Refs yet.
-
- The branch is fast-forwarded if possible, otherwise a merge commit is
- made.
-
- Before Refs are merged into the index, it's important to first stage the
- journal into the index. Otherwise, any changes in the journal would
- later get staged, and might overwrite changes made during the merge.
- This is only done if some of the Refs do need to be merged.
-
- Also handles performing any Transitions that have not yet been
- performed, in either the local branch, or the Refs.
-
- Returns True if any refs were merged in, False otherwise.
-}
updateTo :: [(Git.Ref, Git.Branch)] -> Annex Bool
updateTo pairs = do
-- ensure branch exists, and get its current ref
branchref <- getBranch
dirty <- journalDirty
ignoredrefs <- getIgnoredRefs
(refs, branches) <- unzip <$> filterM (isnewer ignoredrefs) pairs
if null refs
{- Even when no refs need to be merged, the index
- may still be updated if the branch has gotten ahead
- of the index. -}
then whenM (needUpdateIndex branchref) $ lockJournal $ \jl -> do
forceUpdateIndex jl branchref
{- When there are journalled changes
- as well as the branch being updated,
- a commit needs to be done. -}
when dirty $
go branchref True [] [] jl
else lockJournal $ go branchref dirty refs branches
return $ not $ null refs
where
isnewer ignoredrefs (r, _)
| S.member r ignoredrefs = return False
| otherwise = inRepo $ Git.Branch.changed fullname r
go branchref dirty refs branches jl = withIndex $ do
cleanjournal <- if dirty then stageJournal jl else return noop
let merge_desc = if null branches
then "update"
else "merging " ++
unwords (map Git.Ref.describe branches) ++
" into " ++ fromRef name
localtransitions <- parseTransitionsStrictly "local"
<$> getLocal transitionsLog
unless (null branches) $ do
showSideAction merge_desc
mapM_ checkBranchDifferences refs
mergeIndex jl refs
let commitrefs = nub $ fullname:refs
ifM (handleTransitions jl localtransitions commitrefs)
( runAnnexHook postUpdateAnnexHook
, do
ff <- if dirty
then return False
else inRepo $ Git.Branch.fastForward fullname refs
if ff
then updateIndex jl branchref
else commitIndex jl branchref merge_desc commitrefs
)
liftIO cleanjournal
{- Gets the content of a file, which may be in the journal, or in the index
- (and committed to the branch).
-
- Updates the branch if necessary, to ensure the most up-to-date available
- content is returned.
-
- Returns an empty string if the file doesn't exist yet. -}
get :: FilePath -> Annex String
get file = do
update
getLocal file
{- Like get, but does not merge the branch, so the info returned may not
- reflect changes in remotes.
- (Changing the value this returns, and then merging is always the
- same as using get, and then changing its value.) -}
getLocal :: FilePath -> Annex String
getLocal file = go =<< getJournalFileStale file
where
go (Just journalcontent) = return journalcontent
go Nothing = getRaw file
getRaw :: FilePath -> Annex String
getRaw = getRef fullname
getHistorical :: RefDate -> FilePath -> Annex String
getHistorical date file =
-- This check avoids some ugly error messages when the reflog
-- is empty.
ifM (null <$> inRepo (Git.RefLog.get' [Param (fromRef fullname), Param "-n1"]))
( error ("No reflog for " ++ fromRef fullname)
, getRef (Git.Ref.dateRef fullname date) file
)
getRef :: Ref -> FilePath -> Annex String
getRef ref file = withIndex $ decodeBS <$> catFile ref file
{- Applies a function to modifiy the content of a file.
-
- Note that this does not cause the branch to be merged, it only
- modifes the current content of the file on the branch.
-}
change :: FilePath -> (String -> String) -> Annex ()
change file f = lockJournal $ \jl -> f <$> getLocal file >>= set jl file
{- Applies a function which can modify the content of a file, or not. -}
maybeChange :: FilePath -> (String -> Maybe String) -> Annex ()
maybeChange file f = lockJournal $ \jl -> do
v <- getLocal file
case f v of
Just v' | v' /= v -> set jl file v'
_ -> noop
{- Records new content of a file into the journal -}
set :: JournalLocked -> FilePath -> String -> Annex ()
set = setJournalFile
{- Stages the journal, and commits staged changes to the branch. -}
commit :: String -> Annex ()
commit = whenM journalDirty . forceCommit
{- Commits the current index to the branch even without any journalled
- changes. -}
forceCommit :: String -> Annex ()
forceCommit message = lockJournal $ \jl -> do
cleanjournal <- stageJournal jl
ref <- getBranch
withIndex $ commitIndex jl ref message [fullname]
liftIO cleanjournal
{- Commits the staged changes in the index to the branch.
-
- Ensures that the branch's index file is first updated to merge the state
- of the branch at branchref, before running the commit action. This
- is needed because the branch may have had changes pushed to it, that
- are not yet reflected in the index.
-
- The branchref value can have been obtained using getBranch at any
- previous point, though getting it a long time ago makes the race
- more likely to occur.
-
- Note that changes may be pushed to the branch at any point in time!
- So, there's a race. If the commit is made using the newly pushed tip of
- the branch as its parent, and that ref has not yet been merged into the
- index, then the result is that the commit will revert the pushed
- changes, since they have not been merged into the index. This race
- is detected and another commit made to fix it.
-
- (It's also possible for the branch to be overwritten,
- losing the commit made here. But that's ok; the data is still in the
- index and will get committed again later.)
-}
commitIndex :: JournalLocked -> Git.Ref -> String -> [Git.Ref] -> Annex ()
commitIndex jl branchref message parents = do
showStoringStateAction
commitIndex' jl branchref message message 0 parents
commitIndex' :: JournalLocked -> Git.Ref -> String -> String -> Integer -> [Git.Ref] -> Annex ()
commitIndex' jl branchref message basemessage retrynum parents = do
updateIndex jl branchref
committedref <- inRepo $ Git.Branch.commitAlways Git.Branch.AutomaticCommit message fullname parents
setIndexSha committedref
parentrefs <- commitparents <$> catObject committedref
when (racedetected branchref parentrefs) $
fixrace committedref parentrefs
where
-- look for "parent ref" lines and return the refs
commitparents = map (Git.Ref . snd) . filter isparent .
map (toassoc . decodeBS) . L.split newline
newline = c2w8 '\n'
toassoc = separate (== ' ')
isparent (k,_) = k == "parent"
{- The race can be detected by checking the commit's
- parent, which will be the newly pushed branch,
- instead of the expected ref that the index was updated to. -}
racedetected expectedref parentrefs
| expectedref `elem` parentrefs = False -- good parent
| otherwise = True -- race!
{- To recover from the race, union merge the lost refs
- into the index. -}
fixrace committedref lostrefs = do
showSideAction "recovering from race"
let retrynum' = retrynum+1
-- small sleep to let any activity that caused
-- the race settle down
liftIO $ threadDelay (100000 + fromInteger retrynum')
mergeIndex jl lostrefs
let racemessage = basemessage ++ " (recovery from race #" ++ show retrynum' ++ "; expected commit parent " ++ show branchref ++ " but found " ++ show lostrefs ++ " )"
commitIndex' jl committedref racemessage basemessage retrynum' [committedref]
{- Lists all files on the branch. There may be duplicates in the list. -}
files :: Annex [FilePath]
files = do
update
(++)
<$> branchFiles
<*> getJournalledFilesStale
{- Files in the branch, not including any from journalled changes,
- and without updating the branch. -}
branchFiles :: Annex [FilePath]
branchFiles = withIndex $ inRepo $ Git.Command.pipeNullSplitZombie $
lsTreeParams fullname [Param "--name-only"]
{- Populates the branch's index file with the current branch contents.
-
- This is only done when the index doesn't yet exist, and the index
- is used to build up changes to be commited to the branch, and merge
- in changes from other branches.
-}
genIndex :: Git.Repo -> IO ()
genIndex g = Git.UpdateIndex.streamUpdateIndex g
[Git.UpdateIndex.lsTree fullname g]
{- Merges the specified refs into the index.
- Any changes staged in the index will be preserved. -}
mergeIndex :: JournalLocked -> [Git.Ref] -> Annex ()
mergeIndex jl branches = do
prepareModifyIndex jl
h <- catFileHandle
inRepo $ \g -> Git.UnionMerge.mergeIndex h g branches
{- Removes any stale git lock file, to avoid git falling over when
- updating the index.
-
- Since all modifications of the index are performed inside this module,
- and only when the journal is locked, the fact that the journal has to be
- locked when this is called ensures that no other process is currently
- modifying the index. So any index.lock file must be stale, caused
- by git running when the system crashed, or the repository's disk was
- removed, etc.
-}
prepareModifyIndex :: JournalLocked -> Annex ()
prepareModifyIndex _jl = do
index <- fromRepo gitAnnexIndex
void $ liftIO $ tryIO $ removeFile $ index ++ ".lock"
{- Runs an action using the branch's index file. -}
withIndex :: Annex a -> Annex a
withIndex = withIndex' False
withIndex' :: Bool -> Annex a -> Annex a
withIndex' bootstrapping a = do
f <- liftIO . absPath =<< fromRepo gitAnnexIndex
withIndexFile f $ do
checkIndexOnce $ unlessM (liftIO $ doesFileExist f) $ do
unless bootstrapping create
createAnnexDirectory $ takeDirectory f
unless bootstrapping $ inRepo genIndex
a
{- Updates the branch's index to reflect the current contents of the branch.
- Any changes staged in the index will be preserved.
-
- Compares the ref stored in the lock file with the current
- ref of the branch to see if an update is needed.
-}
updateIndex :: JournalLocked -> Git.Ref -> Annex ()
updateIndex jl branchref = whenM (needUpdateIndex branchref) $
forceUpdateIndex jl branchref
forceUpdateIndex :: JournalLocked -> Git.Ref -> Annex ()
forceUpdateIndex jl branchref = do
withIndex $ mergeIndex jl [fullname]
setIndexSha branchref
{- Checks if the index needs to be updated. -}
needUpdateIndex :: Git.Ref -> Annex Bool
needUpdateIndex branchref = do
f <- fromRepo gitAnnexIndexStatus
committedref <- Git.Ref . firstLine <$>
liftIO (catchDefaultIO "" $ readFileStrict f)
return (committedref /= branchref)
{- Record that the branch's index has been updated to correspond to a
- given ref of the branch. -}
setIndexSha :: Git.Ref -> Annex ()
setIndexSha ref = do
f <- fromRepo gitAnnexIndexStatus
liftIO $ writeFile f $ fromRef ref ++ "\n"
setAnnexFilePerm f
runAnnexHook postUpdateAnnexHook
{- Stages the journal into the index and returns an action that will
- clean up the staged journal files, which should only be run once
- the index has been committed to the branch.
-
- Before staging, this removes any existing git index file lock.
- This is safe to do because stageJournal is the only thing that
- modifies this index file, and only one can run at a time, because
- the journal is locked. So any existing git index file lock must be
- stale, and the journal must contain any data that was in the process
- of being written to the index file when it crashed.
-}
stageJournal :: JournalLocked -> Annex (IO ())
stageJournal jl = withIndex $ do
prepareModifyIndex jl
g <- gitRepo
let dir = gitAnnexJournalDir g
(jlogf, jlogh) <- openjlog
liftIO $ fileEncoding jlogh
withJournalHandle $ \jh -> do
h <- hashObjectStart g
Git.UpdateIndex.streamUpdateIndex g
[genstream dir h jh jlogh]
hashObjectStop h
return $ cleanup dir jlogh jlogf
where
genstream dir h jh jlogh streamer = do
v <- readDirectory jh
case v of
Nothing -> return ()
Just file -> do
unless (dirCruft file) $ do
let path = dir </> file
sha <- hashFile h path
hPutStrLn jlogh file
streamer $ Git.UpdateIndex.updateIndexLine
sha FileBlob (asTopFilePath $ fileJournal file)
genstream dir h jh jlogh streamer
-- Clean up the staged files, as listed in the temp log file.
-- The temp file is used to avoid needing to buffer all the
-- filenames in memory.
cleanup dir jlogh jlogf = do
hFlush jlogh
hSeek jlogh AbsoluteSeek 0
stagedfs <- lines <$> hGetContents jlogh
mapM_ (removeFile . (dir </>)) stagedfs
hClose jlogh
nukeFile jlogf
openjlog = do
tmpdir <- fromRepo gitAnnexTmpMiscDir
createAnnexDirectory tmpdir
liftIO $ openTempFile tmpdir "jlog"
{- This is run after the refs have been merged into the index,
- but before the result is committed to the branch.
- (Which is why it's passed the contents of the local branches's
- transition log before that merge took place.)
-
- When the refs contain transitions that have not yet been done locally,
- the transitions are performed on the index, and a new branch
- is created from the result.
-
- When there are transitions recorded locally that have not been done
- to the remote refs, the transitions are performed in the index,
- and committed to the existing branch. In this case, the untransitioned
- remote refs cannot be merged into the branch (since transitions
- throw away history), so they are added to the list of refs to ignore,
- to avoid re-merging content from them again.
-}
handleTransitions :: JournalLocked -> Transitions -> [Git.Ref] -> Annex Bool
handleTransitions jl localts refs = do
m <- M.fromList <$> mapM getreftransition refs
let remotets = M.elems m
if all (localts ==) remotets
then return False
else do
let allts = combineTransitions (localts:remotets)
let (transitionedrefs, untransitionedrefs) =
partition (\r -> M.lookup r m == Just allts) refs
performTransitionsLocked jl allts (localts /= allts) transitionedrefs
ignoreRefs untransitionedrefs
return True
where
getreftransition ref = do
ts <- parseTransitionsStrictly "remote" . decodeBS
<$> catFile ref transitionsLog
return (ref, ts)
ignoreRefs :: [Git.Ref] -> Annex ()
ignoreRefs rs = do
old <- getIgnoredRefs
let s = S.unions [old, S.fromList rs]
f <- fromRepo gitAnnexIgnoredRefs
replaceFile f $ \tmp -> liftIO $ writeFile tmp $
unlines $ map fromRef $ S.elems s
getIgnoredRefs :: Annex (S.Set Git.Ref)
getIgnoredRefs = S.fromList . mapMaybe Git.Sha.extractSha . lines <$> content
where
content = do
f <- fromRepo gitAnnexIgnoredRefs
liftIO $ catchDefaultIO "" $ readFile f
{- Performs the specified transitions on the contents of the index file,
- commits it to the branch, or creates a new branch.
-}
performTransitions :: Transitions -> Bool -> [Ref] -> Annex ()
performTransitions ts neednewlocalbranch transitionedrefs = lockJournal $ \jl ->
performTransitionsLocked jl ts neednewlocalbranch transitionedrefs
performTransitionsLocked :: JournalLocked -> Transitions -> Bool -> [Ref] -> Annex ()
performTransitionsLocked jl ts neednewlocalbranch transitionedrefs = do
-- For simplicity & speed, we're going to use the Annex.Queue to
-- update the git-annex branch, while it usually holds changes
-- for the head branch. Flush any such changes.
Annex.Queue.flush
withIndex $ do
prepareModifyIndex jl
run $ mapMaybe getTransitionCalculator $ transitionList ts
Annex.Queue.flush
if neednewlocalbranch
then do
committedref <- inRepo $ Git.Branch.commitAlways Git.Branch.AutomaticCommit message fullname transitionedrefs
setIndexSha committedref
else do
ref <- getBranch
commitIndex jl ref message (nub $ fullname:transitionedrefs)
where
message
| neednewlocalbranch && null transitionedrefs = "new branch for transition " ++ tdesc
| otherwise = "continuing transition " ++ tdesc
tdesc = show $ map describeTransition $ transitionList ts
{- The changes to make to the branch are calculated and applied to
- the branch directly, rather than going through the journal,
- which would be innefficient. (And the journal is not designed
- to hold changes to every file in the branch at once.)
-
- When a file in the branch is changed by transition code,
- that value is remembered and fed into the code for subsequent
- transitions.
-}
run [] = noop
run changers = do
trustmap <- calcTrustMap <$> getRaw trustLog
fs <- branchFiles
hasher <- inRepo hashObjectStart
forM_ fs $ \f -> do
content <- getRaw f
apply changers hasher f content trustmap
liftIO $ hashObjectStop hasher
apply [] _ _ _ _ = return ()
apply (changer:rest) hasher file content trustmap =
case changer file content trustmap of
RemoveFile -> do
Annex.Queue.addUpdateIndex
=<< inRepo (Git.UpdateIndex.unstageFile file)
-- File is deleted; can't run any other
-- transitions on it.
return ()
ChangeFile content' -> do
sha <- inRepo $ hashObject BlobObject content'
Annex.Queue.addUpdateIndex $ Git.UpdateIndex.pureStreamer $
Git.UpdateIndex.updateIndexLine sha FileBlob (asTopFilePath file)
apply rest hasher file content' trustmap
PreserveFile ->
apply rest hasher file content trustmap
checkBranchDifferences :: Git.Ref -> Annex ()
checkBranchDifferences ref = do
theirdiffs <- allDifferences . parseDifferencesLog . decodeBS
<$> catFile ref differenceLog
mydiffs <- annexDifferences <$> Annex.getGitConfig
when (theirdiffs /= mydiffs) $
error "Remote repository is tuned in incompatable way; cannot be merged with local repository."
|