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path: root/Command/Fsck.hs
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* doh't use "def" for command definitions, it conflicts with Data.Default.defGravatar Joey Hess2014-10-14
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* indent with tabs not spacesGravatar Joey Hess2014-10-09
| | | | | | | | | | | Found these with: git grep "^ " $(find -type f -name \*.hs) |grep -v ': where' Unfortunately there is some inline hamlet that cannot use tabs for indentation. Also, Assistant/WebApp/Bootstrap3.hs is a copy of a module and so I'm leaving it as-is.
* fix some mixed space+tab indentationGravatar Joey Hess2014-10-09
| | | | | | | | | This fixes all instances of " \t" in the code base. Most common case seems to be after a "where" line; probably vim copied the two space layout of that line. Done as a background task while listening to episode 2 of the Type Theory podcast.
* replace (Key, Backend) with KeyGravatar Joey Hess2014-04-17
| | | | | | | | | | Only fsck and reinject and the test suite used the Backend, and they can look it up as needed from the Key. This simplifies the code and also speeds it up. There is a small behavior change here. Before, all commands would warn when acting on an annexed file with an unknown backend. Now, only fsck and reinject show that warning.
* clean up cleanup action enumerationGravatar Joey Hess2014-03-13
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* Put non-object tmp files in .git/annex/misctmp, leaving .git/annex/tmp for ↵Gravatar Joey Hess2014-02-26
| | | | | | | | | | | | | | | | | | | | only partially transferred objects. This allows eg, putting .git/annex/tmp on a ram disk, if the disk IO of temp object files is too annoying (and if you don't want to keep partially transferred objects across reboots). .git/annex/misctmp must be on the same filesystem as the git work tree, since files are moved to there in a way that will not work cross-device, as well as symlinked into there. I first wanted to put the tmp objects in .git/annex/objects/tmp, but that would pose transition problems on upgrade when partially transferred objects existed. git annex info does not currently show the size of .git/annex/misctemp, since it should stay small. It would also be ok to make something clean it out, periodically.
* fix all remaining -Wall warnings on WindowsGravatar Joey Hess2014-02-25
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* tweak wordingGravatar Joey Hess2014-02-20
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* fsck: Refuse to do anything if more than one of --incremental, --more, and ↵Gravatar Joey Hess2014-02-20
| | | | --incremental-schedule are given, since it's not clear which option should win.
* fsck: When run with --all or --unused, while .gitattributes annex.numcopies ↵Gravatar Joey Hess2014-02-20
| | | | cannot be honored since it's operating on keys instead of files, make it honor the global numcopies setting, and the annex.numcopies git config setting.
* windows: fix fsck --incremental to not crashGravatar Joey Hess2014-02-13
| | | | Although it is still not incremental.
* cleanup thanks to Utility.PIDGravatar Joey Hess2014-02-11
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* avoid using openFile when withFile can be usedGravatar Joey Hess2014-02-03
| | | | | | Potentially fixes some FD leak if an action on an opened file handle fails for some reason. There have been some hard to reproduce reports of git-annex leaking FDs, and this may solve them.
* Windows: Avoid using unix-compat's rename, which refuses to rename directories.Gravatar Joey Hess2014-01-29
| | | | Opened a bug about this: https://github.com/jystic/unix-compat/issues/10
* reorganize some files and importsGravatar Joey Hess2014-01-26
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* reorgGravatar Joey Hess2014-01-21
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* numcopies cleanup, part 2Gravatar Joey Hess2014-01-21
| | | | This includes several bug fixes.
* reorganize numcopies code (no behavior changes)Gravatar Joey Hess2014-01-21
| | | | | | | Move stuff into Logs.NumCopies. Add a NumCopies newtype. Better names for various serialization classes that are specific to one thing or another.
* fix inversion of control in CommandSeek (no behavior changes)Gravatar Joey Hess2014-01-20
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | I've been disliking how the command seek actions were written for some time, with their inversion of control and ugly workarounds. The last straw to fix it was sync --content, which didn't fit the Annex [CommandStart] interface well at all. I have not yet made it take advantage of the changed interface though. The crucial change, and probably why I didn't do it this way from the beginning, is to make each CommandStart action be run with exceptions caught, and if it fails, increment a failure counter in annex state. So I finally remove the very first code I wrote for git-annex, which was before I had exception handling in the Annex monad, and so ran outside that monad, passing state explicitly as it ran each CommandStart action. This was a real slog from 1 to 5 am. Test suite passes. Memory usage is lower than before, sometimes by a couple of megabytes, and remains constant, even when running in a large repo, and even when repeatedly failing and incrementing the error counter. So no accidental laziness space leaks. Wall clock speed is identical, even in large repos. This commit was sponsored by an anonymous bitcoiner.
* pull in Win32-extras, to be able to get current process id in WindowsGravatar Joey Hess2013-12-11
| | | | | | | | | Fixed up a number of things that had worked around there not being a way to get that. Most notably, transfer info files on windows now include the process id, since no locking is currently done. This means the file format varies between windows and unix.
* better name for continuationGravatar Joey Hess2013-12-01
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* Direct mode .git/annex/objects directories are no longer left writableGravatar Joey Hess2013-11-15
| | | | | | | | | Because that allowed writing to symlinks of files that are not present, which followed the link and put bad content in an object location. fsck: Fix up .git/annex/object directory permissions. This commit was sponsored by an anonymous bitcoin donor.
* update for Duration type changeGravatar Joey Hess2013-10-08
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* hlintGravatar Joey Hess2013-09-25
| | | | test suite still passes
* fsck: Fix detection and fixing of present direct mode files that are wrongly ↵Gravatar Joey Hess2013-09-13
| | | | represented as standin symlinks on crippled filesystems.
* mirror: New command, makes two repositories contain the same set of files.Gravatar Joey Hess2013-08-20
| | | | | | | | | | | | | | This is a simple approach for setting up a mirroring repository. It will work with any type of remotes. Mirror --from is more expensive than mirror --to in general. OTOH, mirror --from will get the file from any remote that has it, not only the named mirror remote. And if the named mirror remote is not the fastest available remote with a file, that can speed things up. It would be possible to make the assistant or watch command do a more dynamic mirroring, that didn't need to scan every time.
* get rid of __WINDOWS__, use mingw32_HOST_OSGravatar Joey Hess2013-08-02
| | | | | The latter is harder for me to remember, but avoids build failures in code used by the configure program.
* --unused: New switch that makes git-annex operate on all data found by the ↵Gravatar Joey Hess2013-07-03
| | | | last run of git annex unused. Supported by fsck, get, move, copy.
* Add --all option, and support it for fsckGravatar Joey Hess2013-07-03
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* fsck: Ensures that direct mode is used for files when it's enabled.Gravatar Joey Hess2013-06-24
| | | | | | A common failure mode for direct mode has been for files to end up still stored in indirect mode. While I hope that doesn't happen anymore, fsck should deal with it.
* fix buildGravatar Joey Hess2013-06-17
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* fsck: Avoid getting confused by Windows path separatorsGravatar Joey Hess2013-06-17
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* remove workaround for old bug that was only in one releaseGravatar Joey Hess2013-06-17
| | | | | | | It's causing some problem on windows, see http://git-annex.branchable.com/bugs/windows_port_-_repo_can__39__t_pull_newly_added_files_/#comment-45df9748bba687d95e3c96b3877ea925 And only affected WORM backend, and for one release well over a year ago, so could well be bitrotted.
* typoGravatar Joey Hess2013-05-19
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* fix permission damage (thanks, Windows)Gravatar Joey Hess2013-05-11
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* git-annex now builds on Windows (doesn't work)Gravatar Joey Hess2013-05-11
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* fixup #if 0 stubs to use #ifndef mingw32_HOST_OSGravatar Joey Hess2013-05-10
| | | | | | That's needed in files used to build the configure program. For the other files, I'm keeping my __WINDOWS__ define, as I find that much easier to type. I may search and replace it to use the mingw32_HOST_OS thing later.
* stub out POSIX stuffGravatar Joey Hess2013-05-10
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* fsck: Check content of direct mode files (only when the inode cache thinks ↵Gravatar Joey Hess2013-04-16
| | | | | | | they are unmodified). I wrote this earlier, but it never worked because it was looking at the .git/annex/object content, which is not there..
* connect existing meters to the transfer log for downloadsGravatar Joey Hess2013-04-11
| | | | | | | | | | | | | | Most remotes have meters in their implementations of retrieveKeyFile already. Simply hooking these up to the transfer log makes that information available. Easy peasy. This is particularly valuable information for encrypted remotes, which otherwise bypass the assistant's polling of temp files, and so don't have good progress bars yet. Still some work to do here (see progressbars.mdwn changes), but this is entirely an improvement from the lack of progress bars for encrypted downloads.
* Use lower case hash directories for storing files on crippled filesystems, ↵Gravatar Joey Hess2013-04-04
| | | | | | | | | | | | | | | same as is already done for bare repositories. * since this is a crippled filesystem anyway, git-annex doesn't use symlinks on it * so there's no reason to use the mixed case hash directories that we're stuck using to avoid breaking everyone's symlinks to the content * so we can do what is already done for all bare repos, and make non-bare repos on crippled filesystems use the all-lower case hash directories * which are, happily, all 3 letters long, so they cannot conflict with mixed case hash directories * so I was able to 100% fix this and even resuming `git annex add` in the test case will recover and it will all just work.
* add section metadata to all commandsGravatar Joey Hess2013-03-24
| | | | Not yet used .. mindless train work.
* bugfix: drop --from an unavailable remote no longer updates the location ↵Gravatar Joey Hess2013-03-10
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | log, incorrectly, to say the remote does not have the key. The comments correctly noted that the remote could drop the key and yet False be returned due to some problem that occurred afterwards. For example, if it's a network remote, it could drop the key just as the network goes down, and so things timeout and a nonzero exit from ssh is propigated through and False returned. However... Most of the time, this scenario will not have happened. False will mean the remote was not available or could not drop the key at all. So, instead of assuming the worst, just trust the status we have. If we get it wrong, and the scenario above happened, our location log will think the remote has the key. But the remote's location log (assuming it has one) will know it dropped it, and the next sync will regain consistency. For a special remote, with no location log, our location log will be wrong, but this is no different than the situation where someone else dropped the key from the remote and we've not synced with them. The standard paranoia about not trusting the location log to be the last word about whether a remote has a key will save us from these situations. Ie, if we try to drop the file, we'll actively check the remote, and determine the inconsistency then.
* two types of byNameGravatar Joey Hess2013-03-05
| | | | | | | | Clean up from 5123a1a83aa3b954fe67629508bab5ccea0e4148. In some cases, looking up a remote by name even though it has no UUID is desirable. This includes git annex sync, which can operate on remotes without an annex, and XMPP pairing, which runs addRemote (with calls byName) before the UUID of the XMPP remote has been configured in git.
* fully support core.symlinks=false in all relevant symlink handling codeGravatar Joey Hess2013-02-17
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Refactored annex link code into nice clean new library. Audited and dealt with calls to createSymbolicLink. Remaining calls are all safe, because: Annex/Link.hs: ( liftIO $ createSymbolicLink linktarget file only when core.symlinks=true Assistant/WebApp/Configurators/Local.hs: createSymbolicLink link link test if symlinks can be made Command/Fix.hs: liftIO $ createSymbolicLink link file command only works in indirect mode Command/FromKey.hs: liftIO $ createSymbolicLink link file command only works in indirect mode Command/Indirect.hs: liftIO $ createSymbolicLink l f refuses to run if core.symlinks=false Init.hs: createSymbolicLink f f2 test if symlinks can be made Remote/Directory.hs: go [file] = catchBoolIO $ createSymbolicLink file f >> return True fast key linking; catches failure to make symlink and falls back to copy Remote/Git.hs: liftIO $ catchBoolIO $ createSymbolicLink loc file >> return True ditto Upgrade/V1.hs: liftIO $ createSymbolicLink link f v1 repos could not be on a filesystem w/o symlinks Audited and dealt with calls to readSymbolicLink. Remaining calls are all safe, because: Annex/Link.hs: ( liftIO $ catchMaybeIO $ readSymbolicLink file only when core.symlinks=true Assistant/Threads/Watcher.hs: ifM ((==) (Just link) <$> liftIO (catchMaybeIO $ readSymbolicLink file)) code that fixes real symlinks when inotify sees them It's ok to not fix psdueo-symlinks. Assistant/Threads/Watcher.hs: mlink <- liftIO (catchMaybeIO $ readSymbolicLink file) ditto Command/Fix.hs: stopUnless ((/=) (Just link) <$> liftIO (catchMaybeIO $ readSymbolicLink file)) $ do command only works in indirect mode Upgrade/V1.hs: getsymlink = takeFileName <$> readSymbolicLink file v1 repos could not be on a filesystem w/o symlinks Audited and dealt with calls to isSymbolicLink. (Typically used with getSymbolicLinkStatus, but that is just used because getFileStatus is not as robust; it also works on pseudolinks.) Remaining calls are all safe, because: Assistant/Threads/SanityChecker.hs: | isSymbolicLink s -> addsymlink file ms only handles staging of symlinks that were somehow not staged (might need to be updated to support pseudolinks, but this is only a belt-and-suspenders check anyway, and I've never seen the code run) Command/Add.hs: if isSymbolicLink s || not (isRegularFile s) avoids adding symlinks to the annex, so not relevant Command/Indirect.hs: | isSymbolicLink s -> void $ flip whenAnnexed f $ only allowed on systems that support symlinks Command/Indirect.hs: whenM (liftIO $ not . isSymbolicLink <$> getSymbolicLinkStatus f) $ do ditto Seek.hs:notSymlink f = liftIO $ not . isSymbolicLink <$> getSymbolicLinkStatus f used to find unlocked files, only relevant in indirect mode Utility/FSEvents.hs: | Files.isSymbolicLink s = runhook addSymlinkHook $ Just s Utility/FSEvents.hs: | Files.isSymbolicLink s -> Utility/INotify.hs: | Files.isSymbolicLink s -> Utility/INotify.hs: checkfiletype Files.isSymbolicLink addSymlinkHook f Utility/Kqueue.hs: | Files.isSymbolicLink s = callhook addSymlinkHook (Just s) change all above are lower-level, not relevant Audited and dealt with calls to isSymLink. Remaining calls are all safe, because: Annex/Direct.hs: | isSymLink (getmode item) = This is looking at git diff-tree objects, not files on disk Command/Unused.hs: | isSymLink (LsTree.mode l) = do This is looking at git ls-tree, not file on disk Utility/FileMode.hs:isSymLink :: FileMode -> Bool Utility/FileMode.hs:isSymLink = checkMode symbolicLinkMode low-level Done!!
* crippled filesystem support, probing and initial supportGravatar Joey Hess2013-02-14
| | | | | | | | | | | | git annex init probes for crippled filesystems, and sets direct mode, as well as `annex.crippledfilesystem`. Avoid manipulating permissions of files on crippled filesystems. That would likely cause an exception to be thrown. Very basic support in Command.Add for cripped filesystems; avoids the lock down entirely since doing it needs both permissions and hard links. Will make this better soon.
* fsck: Detect and fix consistency errors in direct mode mapping files.Gravatar Joey Hess2013-01-19
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* improve direct mode fsckGravatar Joey Hess2013-01-08
| | | | | | | | | | | | An earlier commit (mislabeled) made direct mode fsck check file checksums. While it's expected for files to change at any time in direct mode, and so fsck cannot complain every time there's a checksum mismatch, it is possible for it to detect when a file does not *seem* to have changed, then check its checksum, and so detect disk corruption or other problems. This commit improves that, by checking a second time, if the checksum fails, that the file is still not modified, before taking action. This way, a direct mode file can be modified while being fscked.
* blog for yesterdayGravatar Joey Hess2013-01-08
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* fix a stupid typo that made fsck loop when it found bad contentGravatar Joey Hess2013-01-07
| | | | Thank goodness for test suites!