git-annex-gpl - git-annex without the AGPL

	Commit message (Collapse)	Author	Age
*	note	Joey Hess	2016-10-17
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*	comment	Joey Hess	2016-10-17
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*	Merge branch 'master' of ssh://git-annex.branchable.com	Joey Hess	2016-10-17
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* \|	lock: Fix edge cases where data loss could occur in v6 mode.	Joey Hess	2016-10-17
\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	In the case where the pointer file is in place, and not the content of the object, lock's performNew was called with filemodified=True, which caused it to try to repopulate the object from an unmodified associated file, of which there were none. So, the content of the object got thrown away incorrectly. This was the cause (although not the root cause) of data loss in https://github.com/datalad/datalad/issues/1020 The same problem could also occur when the work tree file is modified, but the object is not, and lock is called with --force. Added a test case for this, since it's excercising the same code path and is easier to set up than the problem above. Note that this only occurred when the keys database did not have an inode cache recorded for the annex object. Normally, the annex object would be in there, but there are of course circumstances where the inode cache is out of sync with reality, since it's only a cache. Fixed by checking if the object is unmodified; if so we don't need to try to repopulate it. This does add an additional checksum to the unlock path, but it's already checksumming the worktree file in another case, so it doesn't slow it down overall. Further investigation found a similar problem occurred when smudge --clean is called on a file and the inode cache is not populated. cleanOldKeys deleted the unmodified old object file in this case. This was also fixed by checking if the object is unmodified. In general, use of getInodeCaches and sameInodeCache is potentially dangerous if the inode cache has not gotten populated for some reason. Better to use isUnmodified. I breifly auited other places that check the inode cache, and did not see any immediate problems, but it would be easy to miss this kind of problem.
\| *	original whining	https://me.yahoo.com/a/EbvxpTI_xP9Aod7Mg4cwGhgjrCrdM5s-#7c0f4	2016-10-17
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\| *	added meta for myself	https://me.yahoo.com/a/EbvxpTI_xP9Aod7Mg4cwGhgjrCrdM5s-#7c0f4	2016-10-17
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\| *	initial suggestion	https://me.yahoo.com/a/EbvxpTI_xP9Aod7Mg4cwGhgjrCrdM5s-#7c0f4	2016-10-17
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\| *	Git Annex Assistant occasionally replaces files with dangling symlinks.	ryan@d4f0c2d3daacb5ec3a2945bca06f66decad4bfb5	2016-10-15
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\| *	Added a comment: Dumb old me....	https://launchpad.net/~helpunclejackoff	2016-10-15
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\| *	Added a comment	https://launchpad.net/~stephane-gourichon-lpad	2016-10-14
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\| *	Added a comment: git-annex-undo removes files, possibly destroying ↵	https://launchpad.net/~stephane-gourichon-lpad	2016-10-14
\| \| \| \| \| \| \| \|	information? Please explain.
\| *	fix typo	edward	2016-10-13
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*	Merge branch 'master' of ssh://git-annex.branchable.com	Joey Hess	2016-10-13
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* \|	comment	Joey Hess	2016-10-13
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\| *	Added a comment: real happy about optimisations!	https://anarc.at/openid/	2016-10-12
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*	add news item for git-annex 6.20161012	Joey Hess	2016-10-12
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*	releasing package git-annex version 6.201610126.20161012	Joey Hess	2016-10-12
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*	Added a comment	barthalion@8758f91921f1def00205716519c57234f128c328	2016-10-11
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*	Merge branch 'master' of ssh://git-annex.branchable.com	Joey Hess	2016-10-11
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* \|	devblog	Joey Hess	2016-10-11
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* \|	fix tree graft-in bug	Joey Hess	2016-10-11
\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	When adding a tree like a/b/c/d when a/b already exists, fixes the bug that the tree that got created was a/b/a/b/c/d Just need to flatten out the top N directories of the tree that's being grafted in, so we get the c/d part. This was complicated by the Tree data type being a rose tree rather than a regular tree. This commit was sponsored by Nick Daly on Patreon.
* \|	add test case for sync_in_adjusted_branch_deleted_recently_added_files	Joey Hess	2016-10-11
\| \| \| \| \| \| \| \|	This commit was sponsored by Denis Dzyubenko on Patreon.
\| *	Added a comment: related work	fiatjaf	2016-10-11
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*	devblog	Joey Hess	2016-10-10
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*	sync: Fix bug in adjusted branch merging that could cause recently added ↵	Joey Hess	2016-10-10
\| \| \| \| \| \| \| \| \| \| \|	files to be lost when updating the adjusted branch. The modification flag was not being set when making modifications deep in a tree, so parent trees were not updated to contain the modified tree. Seems to have exposed another bug where the wrong filename gets grafted in. This commit was sponsored by Brock Spratlen on Patreon.
*	more analysis	Joey Hess	2016-10-10
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*	reproduce recipe	Joey Hess	2016-10-10
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*	Added a comment: Build on Debian 7.11 AMD64	https://launchpad.net/~stephane-gourichon-lpad	2016-10-10
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*	(no commit message)	https://launchpad.net/~helpunclejackoff	2016-10-09
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*	Move the env description to the right place	https://launchpad.net/~helpunclejackoff	2016-10-09
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*	(no commit message)	https://launchpad.net/~helpunclejackoff	2016-10-09
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*	Added a comment: Workflow Summary	xloem	2016-10-09
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*	Added a comment	xloem	2016-10-09
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*	Reporting missing file in locally installed doc causing reduced reading comfort.	https://launchpad.net/~stephane-gourichon-lpad	2016-10-09
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*	Added a comment: Compression level	barthalion@8758f91921f1def00205716519c57234f128c328	2016-10-08
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*	Added a comment	Tafnzart	2016-10-08
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*	(no commit message)	jwm@affa977977673476597d5d5c7bda464959a9bd9b	2016-10-08
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*	(no commit message)	Tafnzart	2016-10-07
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*	rename ↵	http://christian.amsuess.com/chrysn	2016-10-07
\| \| \| \|	forum/bittorrent__58___support_offline_operation_and_verification.mdwn to todo/bittorrent__58___support_offline_operation_and_verification.mdwn
*	suggest bittorrent enhancements	http://christian.amsuess.com/chrysn	2016-10-07
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*	Added a comment	yomguy	2016-10-07
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*	Added a comment: Re: attaching a torrent file to a downloaded and annexed ↵	http://christian.amsuess.com/chrysn	2016-10-07
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*	(no commit message)	pot	2016-10-06
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*	Added a comment: 780 source files....	pot	2016-10-06
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*	Added a comment	ddenis	2016-10-06
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*	Added a comment	jk@3f2b4ce16bbac41470815333505aa47b91b7a9a6	2016-10-06
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*	devblog	Joey Hess	2016-10-05
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*	response	Joey Hess	2016-10-05
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*	comment	Joey Hess	2016-10-05
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*	Support using v3 repositories without upgrading them to v5.	Joey Hess	2016-10-05
\| \| \| \| \| \| \|	An easy change now that supportedVersions is a list. Since v3 and v5 are identical other than version number, just add v3 to the list. This commit was sponsored by andrea rota.