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+### Please describe the problem.
+While running git annex sync, it may failed if one did run it on some deep directory, and the sync remove this direcory.
+
+### What version of git-annex are you using? On what operating system?
+
+git-annex version: 4.20130815
+build flags: Assistant Webapp Pairing Testsuite S3 WebDAV Inotify DBus XMPP
+local repository version: 3
+default repository version: 3
+supported repository versions: 3 4
+upgrade supported from repository versions: 0 1 2
+
+on Debian Gnu Linux sid
+
+> [[fixed|done]] --[[Joey]]