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-### Please describe the problem.
-Data loss due to incorrect merge of repos in direct mode. (I tested the same scenario in indirect mode and it worked fine there)
-
-Given 2 repos A and B, in direct mode:
-
-1. in A: mkdir f, with a file f in it
-2. in B: touch f
-3. in B: sync
-
-Result: Only an f.variant-f###remains, which is file f of B, and the merge conflict has already been automatically resolved. I.e. Directory f containing file f, is lost.
-
-Expected result: remaining contents: f.variant-AAA which is file f of B, f.variant-BBB which is directory f of A, containing a file f. Merge conflict marked resolved.
-
-### What steps will reproduce the problem?
-Execute the script given below in additional information.
-
-### What version of git-annex are you using?
-git-annex version: 4.20130911-g6625d0e
-build flags: Assistant Webapp Pairing Testsuite S3 WebDAV Inotify DBus XMPP Feeds Quvi
-
-### On what operating system?
-Linux basementcat 3.10.10-1-ARCH #1 SMP PREEMPT Fri Aug 30 11:30:06 CEST 2013 x86_64 GNU/Linux
-
-### Please provide any additional information below.
-
-[[!format sh """
-[~]$ mkdir test
-[~/test]$ mkdir a
-[~/test/a]$ git init
-Initialized empty Git repository in /home/limyreth/test/a/.git/
-[~/test/a]$ git annex init test
-init test ok
-(Recording state in git...)
-[~/test/a]$ touch firstfile
-[~/test/a]$ git annex add firstfile
-add firstfile (checksum...) ok
-(Recording state in git...)
-[~/test/a]$ git annex sync
-commit
-ok
-git-annex: no branch is checked out
-[~]$ git clone test/a
-Cloning into 'a'...
-done.
-[~]$ mv a test/b
-[~/test/a]$ git annex direct
-commit
-# On branch master
-nothing to commit, working directory clean
-ok
-direct firstfile ok
-direct ok
-[~/test/a]$ ls -l
-total 0
--rw-r--r-- 1 limyreth users 0 Oct 12 15:09 firstfile
-[~/test/a]$ mkdir f
-[~/test/a]$ touch f/f
-[~/test/a]$ git annex add f/f
-add f/f (checksum...) ok
-(Recording state in git...)
-[~/test/a]$ git annex sync
-commit
-ok
-[~/test/b]$ git remote -v
-origin /home/limyreth/test/a (fetch)
-origin /home/limyreth/test/a (push)
-[~/test/b]$ ls
-firstfile
-[~/test/b]$ git annex direct
-commit
-(Recording state in git...)
-# On branch master
-nothing to commit, working directory clean
-ok
-direct ok
-[~/test/b]$ touch f
-[~/test/b]$ git annex add f
-add f (checksum...) ok
-(Recording state in git...)
-[~/test/b]$ git annex sync
-(merging origin/git-annex into git-annex...)
-(Recording state in git...)
-commit
-ok
-pull origin
-remote: Counting objects: 14, done.
-remote: Compressing objects: 100% (7/7), done.
-remote: Total 9 (delta 1), reused 0 (delta 0)
-Unpacking objects: 100% (9/9), done.
-From /home/limyreth/test/a
- 2a8fa45..ad6802d master -> origin/master
- 1f39016..19e3e12 git-annex -> origin/git-annex
- * [new branch] synced/master -> origin/synced/master
-
-Adding f/f
-CONFLICT (file/directory): There is a directory with name f in refs/remotes/origin/master. Adding f as f~HEAD
-Automatic merge failed; fix conflicts and then commit the result.
-f: needs merge
-(Recording state in git...)
-ok
-[master 37a8019] git-annex automatic merge conflict fix
-
-Already up-to-date.
-ok
-(merging origin/git-annex into git-annex...)
-(Recording state in git...)
-push origin
-Counting objects: 36, done.
-Delta compression using up to 4 threads.
-Compressing objects: 100% (20/20), done.
-Writing objects: 100% (25/25), 2.16 KiB | 0 bytes/s, done.
-Total 25 (delta 5), reused 0 (delta 0)
-To /home/limyreth/test/a
- ad6802d..37a8019 master -> synced/master
- * [new branch] git-annex -> synced/git-annex
-ok
-[~/test/b]$ ls -l
-total 0
--rw-r--r-- 1 limyreth users 0 Oct 12 15:11 firstfile
--rw-r--r-- 1 limyreth users 0 Oct 12 15:11 f.variant-f874
-[~/test/b]$ git log --summary
-commit 37a80199abe3cf82100bbdb5dd2217ed6bcb4b62
-Merge: 5a8942a ad6802d
-Author: timdiels <timdiels.m@gmail.com>
-Date: Sat Oct 12 15:11:47 2013 +0200
-
- git-annex automatic merge conflict fix
-
-commit 5a8942a9a1735cb313c1f6624cbd3f48b252d9d9
-Author: timdiels <timdiels.m@gmail.com>
-Date: Sat Oct 12 15:11:47 2013 +0200
-
- git-annex automatic sync
-
- create mode 120000 f
-
-commit ad6802dc231d389b86154e2df900a70b18e17b29
-Author: timdiels <timdiels.m@gmail.com>
-Date: Sat Oct 12 15:11:40 2013 +0200
-
- git-annex automatic sync
-
- create mode 120000 f/f
-
-commit 2a8fa45bea996ab5ae219a017d4b642153e6d9c9
-Author: timdiels <timdiels.m@gmail.com>
-Date: Sat Oct 12 15:09:40 2013 +0200
-
- git-annex automatic sync
-
- create mode 120000 firstfile
-[~/test/a]$ git annex sync
-(merging synced/git-annex into git-annex...)
-commit
-ok
-merge synced/master
-Updating ad6802d..37a8019
-Fast-forward
- f.variant-f874 | 1 +
- f/f | 1 -
- 2 files changed, 1 insertion(+), 1 deletion(-)
- create mode 120000 f.variant-f874
- delete mode 120000 f/f
-ok
-[~/test/a]$ git log --summary
-commit 37a80199abe3cf82100bbdb5dd2217ed6bcb4b62
-Merge: 5a8942a ad6802d
-Author: timdiels <timdiels.m@gmail.com>
-Date: Sat Oct 12 15:11:47 2013 +0200
-
- git-annex automatic merge conflict fix
-
-commit 5a8942a9a1735cb313c1f6624cbd3f48b252d9d9
-Author: timdiels <timdiels.m@gmail.com>
-Date: Sat Oct 12 15:11:47 2013 +0200
-
- git-annex automatic sync
-
- create mode 120000 f
-
-commit ad6802dc231d389b86154e2df900a70b18e17b29
-Author: timdiels <timdiels.m@gmail.com>
-Date: Sat Oct 12 15:11:40 2013 +0200
-
- git-annex automatic sync
-
- create mode 120000 f/f
-
-commit 2a8fa45bea996ab5ae219a017d4b642153e6d9c9
-Author: timdiels <timdiels.m@gmail.com>
-Date: Sat Oct 12 15:09:40 2013 +0200
-
- git-annex automatic sync
-
- create mode 120000 firstfile
-
-"""]]
-
-> Bug fixed; test case added; [[done]] --[[Joey]]