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authorGravatar https://www.google.com/accounts/o8/id?id=AItOawnT7et8wPkEerW4yk_dJ2kgNijKvgzVm9Q <Giovanni@web>2013-03-03 10:10:28 +0000
committerGravatar admin <admin@branchable.com>2013-03-03 10:10:28 +0000
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+Before I start on what's gone wrong, many thanks for a great program: finally a way of finding out where I've put all those files, and I enjoyed your talk in Australia. Not quite to New Zealand, but a good start :-)
+
+To play with git-annex, I decided to convert my ~/Downloads directory to a git-annex repository, as there were a wide variety of files in it, mostly easily replaceable, and also handy to have on multiple machines. In hindsight, probably wasn't a great idea, as I'd regularly forget it was a git-annex repo and move files and directories out manually, which caused all sorts of fun trying to sort out the dead symlinks. Then I after one update, the repository format changed, from WORM to xxx256 format which meant there were now both sorts in the GA object store.
+
+More recently I'd tried converting the repo to direct mode, you get the idea: lots of playing with git-annex commands, and now that I think about it, possibly some git commands too trying to repair missing files.
+
+Anyway I've ended up with a 27GB git-annex repo that now manages to kill git-annex whenever I try to check it using "git-annex fsck".
+
+Not only does the fsck subcommand cause it to die, but also "find", "whereis" and "status". It dies on the same file (for find/whereis/fsck).
+
+e.g.
+
+ ... lots of stuff deleted ...
+ whereis 1wolf14.zip (2 copies)
+ 051f0b00-e265-11e1-894e-3b0b3f3844f2 -- Laptop
+ 2c4e11e0-a1b4-11e1-9a02-73e17b04c00f -- here (myPC - Downloads)
+ ok
+ git-annex: out of memory (requested 2097152 bytes)
+
+Now "git status" for some repo data:
+
+ myPC:~/Downloads$ git annex status
+ supported backends: SHA256E SHA1E SHA512E SHA224E SHA384E SHA256 SHA1 SHA512 SHA224 SHA384 WORM URL
+ supported remote types: git S3 bup directory rsync web webdav glacier hook
+ repository mode: direct
+ trusted repositories: 0
+ semitrusted repositories: 4
+ 00000000-0000-0000-0000-000000000001 -- web
+ 051f0b00-e265-11e1-894e-3b0b3f3844f2 -- Laptop
+ 2c4e11e0-a1b4-11e1-9a02-73e17b04c00f -- here (myPC - Downloads)
+ 48fbe52a-a1b3-11e1-bb80-ebc15118871d -- netbk
+ untrusted repositories: 0
+ dead repositories: 0
+ transfers in progress: none
+ available local disk space: 100 gigabytes (+1 megabyte reserved)
+ local annex keys: 1719
+ local annex size: 27 gigabytes
+ known annex keys: git-annex: out of memory (requested 2097152 bytes)
+
+It always seems to die at about 3.5GB memory usage. This is running on Ubuntu 12.04, using the latest GA release built using cabal:
+
+ git-annex version: 4.20130227
+ local repository version: 3
+ default repository version: 3
+ supported repository versions: 3 4
+ upgrade supported from repository versions: 0 1 2
+
+There are also dead symlinks that point to directories that have meta-data but not the symlink target (manually line-wrapped):
+
+ myPC:~/Downloads$ ls -l precise*
+ lrwxrwxrwx 1 nino nino 194 Oct 21 12:48 precise-dvd-i386.iso ->
+ .git/annex/objects/0x/Xz/SHA256-s3590631424--
+ b08ecdd4846948ec076b23afae7f87be9cfba5218fb9ba4160f26c0b8d4b5dd0/
+ SHA256-s3590631424--b08ecdd4846948ec076b23afae7f87be9cfba5218fb9ba4160f26c0b8d4b5dd0
+
+But looking in the symlink destination directory, there's no corresponding object, only metadata:
+
+ myPC:~/Downloads/.git/annex/objects/0x/Xz/SHA256-s3590631424--b08ecdd4846948ec076b23afae7f87be9cfba5218fb9ba4160f26c0b8d4b5dd0$ ls -l
+ total 8
+ -rw-rw-r-- 1 nino nino 30 Jan 8 23:15 SHA256-s3590631424--b08ecdd4846948ec076b23afae7f87be9cfba5218fb9ba4160f26c0b8d4b5dd0.cache
+ -rw-rw-r-- 1 nino nino 49 Jan 8 23:15 SHA256-s3590631424--b08ecdd4846948ec076b23afae7f87be9cfba5218fb9ba4160f26c0b8d4b5dd0.map
+
+But there is another version somewhere else.
+
+ -r--r--r-- 1 nino nino 3590631424 Mar 18 2012 ./.git/annex/objects/Kj/wM/WORM-s3590631424-m1331991509
+ --precise-dvd-i386.iso/WORM-s3590631424-m1331991509--precise-dvd-i386.iso
+
+This actual file does exist in the "Used" directory:
+
+ -rw-r--r-- 1 nino nino 3.4G May 27 2012 precise-dvd-i386.iso
+
+I'm not so worried about the mangled repo - it's quite possibly because of clueless git/git-annex command usage - but the inability to use the fsck command is concerning
+
+I could just uninit everything, but as it dies prematurely, I'm not certain that all the contents would be restored.
+Any thoughts on how I can get git-annex (esp. fsck) to complete would be appreciated.
+
+Thanks
+Giovanni