Fix fsck --from a git remote in a local directory, and from a directory special remote. This was a reversion caused by the relative path changes in 5.20150113.

The directory special remote was not affected in its normal configuration,
since annex-directory is an absolute path normally. But it could fail
when a relative path was used.

The git remote was affected even when an absolute path to it was used in
.git/config, since git-annex now converts all such paths to relative.

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