diff options
| author |  https://id.koumbit.net/anarcat <https://id.koumbit.net/anarcat@web> | 2014-01-01 19:00:55 +0000 |
|---|---|---|
| committer |  admin <admin@branchable.com> | 2014-01-01 19:00:55 +0000 |
| commit | 0fdf8e5a35ed33ff84eec55141dbb3362beb351a (patch) | |
| tree | c4c9c8e35a0889634487cf57b7b87dec9e77c6f5 /doc/bugs/assistant_eats_all_CPU.mdwn | |
| parent | b33c0a47c6ff67f920647c1736c9279e06742426 (diff) | |
Diffstat (limited to 'doc/bugs/assistant_eats_all_CPU.mdwn')
| -rw-r--r-- | doc/bugs/assistant_eats_all_CPU.mdwn | 416 |
1 files changed, 416 insertions, 0 deletions
diff --git a/doc/bugs/assistant_eats_all_CPU.mdwn b/doc/bugs/assistant_eats_all_CPU.mdwn new file mode 100644 index 000000000..043fab26e --- /dev/null +++ b/doc/bugs/assistant_eats_all_CPU.mdwn @@ -0,0 +1,416 @@ +### Please describe the problem. + +After running for a while, the assistant maxes my CPU. I have evidence +here that it is just sitting there, doing apparently nothing (transfers +are finished), eating precious CPU. + +Nowadays, I do not let the assistant run on its own, otherwise it makes +my office noisy because the CPU fan starts. + +This makes the assistant and the webapp basically unuseable for me: +if i want to use its feature, I must remember to shut down the daemon +every time I am done with it, which seems contrary to the spirit of +the project. :) + +### What steps will reproduce the problem? + +It's a little unclear. There was a peculiar crash here (power cable +yanked out) during a `git annex copy`, which *was* eating up all CPU, +but mostly through I/O. + +That is the purple block in this graph: + +![CPU usage during the last 24 hours][cpu-day.png] + +Power was yanked out about right after that purple block was gone: + +![Uptime in the last 24 hours][uptime-day.png] + +Files were copied to an external drive at the time of the crash, +which explains the high iowait. The last lines in daemon.log are: + +[[!format txt """ +sent 184184937 bytes received 31 bytes 13643330.96 bytes/sec +total size is 184162304 speedup is 1.00 +[2013-12-31 23:56:47 EST] Transferrer: Uploaded American ..Queen.avi +[2013-12-31 23:56:47 EST] Pusher: Syncing with backup +To /backup/srv/video + 5155be4..7d904d5 git-annex -> synced/git-annex +"""]] + +And daemon.status: + +[[!format txt """ +lastRunning:1388569856.366405s +scanComplete:True +sanityCheckRunning:False +lastSanityCheck:1387169250.801117s +"""]] + +When the machine rebooted, I logged in, and resumed the transfer using +`git annex copy`. The assistant was also started automatically during +my session, but I wasn't aware of that until this morning (7AM) when i +came back to the terminal and noticed how noisy it was. + +At that point i did `killall git-annex` and CPU usage returned to +normal, as the frequency of the CPU: + +![CPU frequency scaling in the last 24 hours][cpuspeed-day.png] + +I am trying to see if I can reproduce this problem reliably - I +just started the assistant again now, and while the CPU usage is +already high, I will forgive it for now because it's doing its +initial scans... Let's see what happens in the afternoon! --[[anarcat]] + + [cpu-day.png]: http://paste.anarc.at/cpu-day.png + [uptime-day.png]: http://paste.anarc.at/uptime-day.png + [cpuspeed-day.png]: http://paste.anarc.at/cpuspeed-day.png + +### What version of git-annex are you using? On what operating system? + +Debian wheezy. + +[[!format sh """ +anarcat@marcos:~$ git annex version +git-annex version: 5.20131109-gf2cb5b9 +build flags: Assistant Webapp Pairing Testsuite S3 WebDAV Inotify DBus XMPP DNS Feeds Quvi TDFA CryptoHash +key/value backends: SHA256E SHA1E SHA512E SHA224E SHA384E SKEIN256E SKEIN512E SHA256 SHA1 SHA512 SHA224 SHA384 SKEIN256 SKEIN512 WORM URL +remote types: git gcrypt S3 bup directory rsync web webdav glacier hook +"""]] + +### Please provide any additional information below. + +This *may* be related to [[bugs/webapp_takes_100__37___of_the_cpu/]], +but I didn't observe both problems simultaneously so far - ie. the +webapp doesn't need to run for this bug to happen. + +Here's the output of top: + +[[!format sh """ +top - 04:55:01 up 16:01, 10 users, load average: 3,96, 3,72, 3,59 +Tasks: 293 total, 6 running, 284 sleeping, 0 stopped, 3 zombie +%Cpu(s): 87,4 us, 10,9 sy, 0,6 ni, 0,1 id, 0,3 wa, 0,0 hi, 0,7 si, 0,0 st +KiB Mem: 8162960 total, 6847120 used, 1315840 free, 1084756 buffers +KiB Swap: 4022268 total, 1320 used, 4020948 free, 2041108 cached + + PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND + 8099 anarcat 20 0 144m 28m 18m S 34,0 0,4 460:10.96 git-annex + 6525 anarcat 20 0 436m 295m 18m S 28,4 3,7 448:50.71 git-annex +11146 munin 20 0 25376 6540 1896 R 28,4 0,1 0:00.05 munin-update + 8045 anarcat 20 0 165m 41m 18m S 22,7 0,5 455:14.41 git-annex +11142 root 20 0 32316 7356 2016 R 22,7 0,1 0:00.05 ikisite +11144 aegir 20 0 161m 16m 6608 R 22,7 0,2 0:00.05 php + 2649 liquidso 20 0 222m 54m 5516 S 5,7 0,7 40:40.61 liquidsoap +11149 anarcat 20 0 24448 1552 1072 R 5,7 0,0 0:00.01 top + 1 root 20 0 10644 784 652 S 0,0 0,0 0:01.10 init + 2 root 20 0 0 0 0 S 0,0 0,0 0:00.01 kthreadd + 3 root 20 0 0 0 0 S 0,0 0,0 2:10.09 ksoftirqd/0 + 6 root rt 0 0 0 0 S 0,0 0,0 0:00.22 migration/0 + 7 root rt 0 0 0 0 S 0,0 0,0 0:00.59 watchdog/0 + 8 root rt 0 0 0 0 S 0,0 0,0 0:00.25 migration/1 + 10 root 20 0 0 0 0 S 0,0 0,0 2:11.10 ksoftirqd/1 + 12 root rt 0 0 0 0 S 0,0 0,0 0:00.17 watchdog/1 + 13 root 0 -20 0 0 0 S 0,0 0,0 0:00.00 cpuset + 14 root 0 -20 0 0 0 S 0,0 0,0 0:00.00 khelper + 15 root 20 0 0 0 0 S 0,0 0,0 0:00.00 kdevtmpfs + 16 root 0 -20 0 0 0 S 0,0 0,0 0:00.00 netns + 17 root 20 0 0 0 0 S 0,0 0,0 0:00.17 sync_supers + 18 root 20 0 0 0 0 S 0,0 0,0 0:00.00 bdi-default + 19 root 0 -20 0 0 0 S 0,0 0,0 0:00.00 kintegrityd + 20 root 0 -20 0 0 0 S 0,0 0,0 0:00.00 kblockd + 22 root 20 0 0 0 0 S 0,0 0,0 0:00.06 khungtaskd + 23 root 20 0 0 0 0 S 0,0 0,0 3:04.23 kswapd0 + 24 root 25 5 0 0 0 S 0,0 0,0 0:00.00 ksmd + 25 root 39 19 0 0 0 S 0,0 0,0 0:00.00 khugepaged + 26 root 20 0 0 0 0 S 0,0 0,0 0:00.00 fsnotify_mark + 27 root 0 -20 0 0 0 S 0,0 0,0 0:00.00 crypto + 113 root 20 0 0 0 0 S 0,0 0,0 0:00.01 khubd + 133 root 0 -20 0 0 0 S 0,0 0,0 0:00.00 ata_sff + 153 root 20 0 0 0 0 S 0,0 0,0 0:05.68 scsi_eh_0 + 158 root 20 0 0 0 0 S 0,0 0,0 0:00.00 scsi_eh_1 + 160 root 20 0 0 0 0 S 0,0 0,0 0:00.09 kworker/u:2 + 161 root 20 0 0 0 0 S 0,0 0,0 0:00.00 scsi_eh_2 + 162 root 20 0 0 0 0 S 0,0 0,0 0:00.00 scsi_eh_3 + 163 root 20 0 0 0 0 S 0,0 0,0 0:01.43 kworker/u:3 + 294 root 0 -20 0 0 0 S 0,0 0,0 0:00.00 kdmflush + 295 root 0 -20 0 0 0 S 0,0 0,0 0:00.00 kcryptd_io + 296 root 0 -20 0 0 0 S 0,0 0,0 0:00.00 kcryptd + 305 root 0 -20 0 0 0 S 0,0 0,0 0:00.00 kdmflush + 307 root 0 -20 0 0 0 S 0,0 0,0 0:00.00 kdmflush + 311 root 0 -20 0 0 0 S 0,0 0,0 0:00.00 kdmflush + 313 root 0 -20 0 0 0 S 0,0 0,0 0:00.00 kdmflush + 341 root 0 -20 0 0 0 S 0,0 0,0 0:00.00 kdmflush + 342 root 0 -20 0 0 0 S 0,0 0,0 0:00.00 kcryptd_io + 343 root 0 -20 0 0 0 S 0,0 0,0 0:00.00 kcryptd + 352 root 0 -20 0 0 0 S 0,0 0,0 0:00.00 kdmflush + 354 root 0 -20 0 0 0 S 0,0 0,0 0:00.00 kdmflush + 356 root 0 -20 0 0 0 S 0,0 0,0 0:00.00 kdmflush + 358 root 0 -20 0 0 0 S 0,0 0,0 0:00.00 kdmflush + 361 root 0 -20 0 0 0 S 0,0 0,0 0:00.00 kdmflush + 400 root 20 0 0 0 0 S 0,0 0,0 0:00.00 jbd2/dm-1-8 + 401 root 0 -20 0 0 0 S 0,0 0,0 0:00.00 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accounts-daemon + 2974 clamav 20 0 45432 2172 1260 S 0,0 0,0 0:26.77 freshclam + 2997 root 20 0 141m 4552 3072 S 0,0 0,1 0:00.21 polkitd + 3021 root 20 0 18876 984 740 S 0,0 0,0 0:00.48 cron + 3062 root 20 0 75948 3436 2304 S 0,0 0,0 0:00.03 cupsd + 3064 colord 20 0 152m 8672 3344 S 0,0 0,1 0:00.10 colord + 3069 root 20 0 126m 4116 2964 S 0,0 0,1 0:00.16 console-kit-dae + 3071 colord 20 0 300m 12m 7932 S 0,0 0,2 0:01.23 colord-sane + 3171 nobody 10 -10 44328 1672 1048 S 0,0 0,0 0:00.88 gpsd + 3178 root 20 0 9204 3508 380 S 0,0 0,0 0:39.47 haveged + 3192 ikiwiki- 20 0 13772 864 728 S 0,0 0,0 0:00.00 git-daemon + 3310 anarcat 20 0 91856 27m 2820 S 0,0 0,3 0:03.30 xterm + 3314 anarcat 20 0 24004 5452 1876 S 0,0 0,1 0:00.54 bash + 3336 root 20 0 152m 4172 3300 S 0,0 0,1 0:00.07 upowerd + 3437 root 20 0 0 0 0 S 0,0 0,0 0:00.00 scsi_eh_6 + 3438 root 20 0 0 0 0 S 0,0 0,0 6:52.70 usb-storage + 3470 anarcat 20 0 61648 2516 1912 S 0,0 0,0 0:00.01 gvfs-gphoto2-vo + 3474 anarcat 20 0 78024 2564 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0,0 0,5 0:04.46 chromium + 7072 anarcat 20 0 967m 49m 19m S 0,0 0,6 0:05.17 chromium + 7078 anarcat 20 0 971m 53m 19m S 0,0 0,7 0:05.68 chromium + 7087 anarcat 20 0 963m 51m 19m S 0,0 0,7 0:04.75 chromium + 7096 anarcat 20 0 961m 48m 18m S 0,0 0,6 0:04.75 chromium + 7107 anarcat 20 0 161m 4440 3252 S 0,0 0,1 0:02.90 gvfs-gdu-volume + 7127 anarcat 20 0 967m 55m 22m S 0,0 0,7 1:07.92 chromium + 7183 anarcat 20 0 912m 55m 20m S 0,0 0,7 0:04.97 chromium + 7213 anarcat 20 0 964m 47m 19m S 0,0 0,6 0:04.69 chromium + 7235 anarcat 20 0 965m 65m 21m S 0,0 0,8 0:05.26 chromium + 7258 anarcat 20 0 961m 57m 20m S 0,0 0,7 0:05.39 chromium + 7285 anarcat 20 0 18652 2484 1000 S 0,0 0,0 0:01.25 git + 7434 anarcat 39 19 18124 1960 964 S 0,0 0,0 0:00.29 git + 7445 www-data 20 0 141m 24m 5620 S 0,0 0,3 0:00.71 munin-cgi-graph + 7452 anarcat 20 0 980m 63m 22m S 0,0 0,8 0:02.50 chromium + 7492 anarcat 20 0 978m 64m 21m S 0,0 0,8 0:03.74 chromium + 7498 anarcat 20 0 978m 61m 21m S 0,0 0,8 0:01.42 chromium + 7518 anarcat 20 0 984m 63m 22m S 0,0 0,8 0:04.38 chromium + 7532 anarcat 20 0 973m 56m 21m S 0,0 0,7 0:02.28 chromium + 7813 root 20 0 0 0 0 S 0,0 0,0 0:01.22 kworker/0:2 + 7899 root 20 0 0 0 0 S 0,0 0,0 0:00.96 kworker/1:0 + 8058 anarcat 20 0 24488 1460 1104 S 0,0 0,0 0:28.34 git + 8107 anarcat 20 0 17412 1384 1100 S 0,0 0,0 0:00.00 git + 8130 anarcat 20 0 23792 7572 1004 S 0,0 0,1 0:41.63 git + 8236 anarcat 39 19 21152 4940 964 S 0,0 0,1 0:00.71 git + 8405 anarcat 20 0 17368 1364 1108 S 0,0 0,0 0:00.54 git + 8407 anarcat 20 0 17464 1336 964 S 0,0 0,0 0:00.03 git + 8610 anarcat 20 0 78228 14m 2860 S 0,0 0,2 0:00.37 xterm + 8614 anarcat 20 0 23084 4548 1796 S 0,0 0,1 0:00.28 bash + 8689 anarcat 20 0 72992 9224 2860 S 0,0 0,1 0:00.38 xterm + 8693 anarcat 20 0 22876 4380 1696 S 0,0 0,1 0:00.07 bash + 8735 root 20 0 99,3m 4616 3576 S 0,0 0,1 0:00.02 gdm-simple-slav + 8736 root 20 0 142m 15m 6664 S 0,0 0,2 0:00.56 Xorg + 8755 Debian-g 20 0 30196 1184 736 S 0,0 0,0 0:00.01 dbus-daemon + 8756 root 20 0 119m 4548 3432 S 0,0 0,1 0:00.08 gdm-session-wor + 8757 root 20 0 55872 2116 1572 S 0,0 0,0 0:00.00 sudo + 8759 aegir 20 0 20640 2248 1660 S 0,0 0,0 0:00.07 bash + 8769 Debian-g 20 0 266m 10m 7720 S 0,0 0,1 0:00.07 gnome-session + 8773 Debian-g 20 0 502m 24m 10m S 0,0 0,3 0:00.85 gnome-settings- + 8780 Debian-g 20 0 51980 2236 1836 S 0,0 0,0 0:00.00 gvfsd + 8784 Debian-g 9 -11 237m 6044 3644 S 0,0 0,1 0:00.07 pulseaudio + 8785 Debian-g 20 0 113m 3196 2448 S 0,0 0,0 0:00.00 gconf-helper + 8787 Debian-g 20 0 52956 3756 1932 S 0,0 0,0 0:00.06 gconfd-2 + 8790 Debian-g 20 0 279m 9124 6632 S 0,0 0,1 0:00.12 metacity + 8795 Debian-g 20 0 171m 9328 7056 S 0,0 0,1 0:00.04 polkit-gnome-au + 8796 Debian-g 20 0 362m 16m 11m S 0,0 0,2 0:00.68 gdm-simple-gree + 8812 root 20 0 72360 3916 2948 S 0,0 0,0 0:00.08 gdm-session-wor + 9129 root 20 0 0 0 0 S 0,0 0,0 0:00.74 kworker/0:0 + 9311 www-data 20 0 288m 44m 33m S 0,0 0,6 0:07.55 apache2 +10405 www-data 20 0 287m 42m 32m S 0,0 0,5 0:06.75 apache2 +10406 www-data 20 0 287m 44m 34m S 0,0 0,6 0:07.02 apache2 +10409 www-data 20 0 287m 41m 31m S 0,0 0,5 0:06.51 apache2 +10412 www-data 20 0 287m 42m 32m S 0,0 0,5 0:06.82 apache2 +10413 www-data 20 0 291m 40m 27m S 0,0 0,5 0:06.52 apache2 +10415 www-data 20 0 287m 39m 29m S 0,0 0,5 0:06.67 apache2 +10416 www-data 20 0 288m 42m 31m S 0,0 0,5 0:06.28 apache2 +10417 www-data 20 0 290m 50m 38m S 0,0 0,6 0:07.43 apache2 +10878 root 20 0 0 0 0 S 0,0 0,0 0:00.02 kworker/0:3 +11037 anarcat 20 0 4180 584 488 S 0,0 0,0 0:00.00 sh +11038 anarcat 20 0 62760 4964 3244 S 0,0 0,1 0:00.48 notmuch +11040 anarcat 20 0 4180 652 544 S 0,0 0,0 0:00.00 post-new +11133 root 20 0 52576 1468 1052 S 0,0 0,0 0:00.00 cron +11134 root 20 0 52576 1464 1052 S 0,0 0,0 0:00.00 cron +11135 root 20 0 52576 1468 1052 S 0,0 0,0 0:00.00 cron +11138 aegir 20 0 4176 576 484 S 0,0 0,0 0:00.00 sh +11139 root 20 0 4176 580 484 S 0,0 0,0 0:00.00 sh +11141 munin 20 0 4176 576 480 S 0,0 0,0 0:00.00 sh +11143 root 20 0 4240 324 248 S 0,0 0,0 0:00.00 xargs +11145 munin 20 0 4176 576 484 S 0,0 0,0 0:00.00 munin-cron +11166 anarcat 20 0 61364 2988 2468 R 0,0 0,0 0:00.00 notmuch +11167 anarcat 20 0 61364 752 212 R 0,0 0,0 0:00.00 notmuch +12004 www-data 20 0 292m 52m 37m S 0,0 0,7 0:09.05 apache2 +12172 anarcat 20 0 4092 580 480 S 0,0 0,0 0:00.00 emacsclient +12465 spampd 20 0 149m 65m 2840 S 0,0 0,8 0:01.41 spampd +12468 spampd 20 0 150m 67m 2840 S 0,0 0,8 0:01.07 spampd +12895 anarcat 20 0 970m 51m 21m S 0,0 0,6 0:01.80 chromium +13761 anarcat 20 0 0 0 0 Z 0,0 0,0 0:00.00 git +16056 root 20 0 21800 1464 452 S 0,0 0,0 0:00.00 udevd +16057 root 20 0 21800 1340 332 S 0,0 0,0 0:00.00 udevd +16655 www-data 20 0 147m 8232 700 S 0,0 0,1 0:00.04 apache2 +17006 anarcat 20 0 526m 29m 17m S 0,0 0,4 0:19.95 gmpc +17959 www-data 20 0 70828 24m 2172 S 0,0 0,3 1:22.37 munin-cgi-html +18082 anarcat 20 0 71776 8164 2820 S 0,0 0,1 0:00.12 xterm +18086 anarcat 20 0 23048 4664 1804 S 0,0 0,1 0:00.18 bash +18571 anarcat 20 0 258m 11m 8296 S 0,0 0,1 0:00.11 xfrun4 +19692 spampd 20 0 148m 64m 2832 S 0,0 0,8 0:00.63 spampd +25574 anarcat 20 0 952m 31m 15m S 0,0 0,4 0:00.71 chromium +25590 anarcat 20 0 0 0 0 Z 0,0 0,0 0:41.75 chromium +"""]] + +And here's the process tree: + +[[!format sh """ +$ ps -O start xf | grep git-annex + 8610 13:03:21 S ? 00:00:00 xterm -class UXTerm -title uxterm -u8 + 8614 13:03:21 S pts/4 00:00:00 \_ bash +12172 13:13:15 S pts/4 00:00:00 \_ emacsclient --alternate-editor=vim -c install.hostmaster.inc + 8099 13:00:20 S ? 07:40:31 /usr/local/bin/git-annex assistant --startdelay=5s + 8107 13:00:20 S ? 00:00:00 \_ git --git-dir=/srv/books/.git --work-tree=/srv/books -c core.bare=false cat-file --batch + 8405 13:00:28 S ? 00:00:00 \_ git --git-dir=/srv/books/.git --work-tree=/srv/books -c core.bare=false cat-file --batch + 8407 13:00:28 S ? 00:00:00 \_ git --git-dir=/srv/books/.git --work-tree=/srv/books -c core.bare=false check-ignore -z --stdin --verbose --non-matching + 8045 13:00:11 S ? 07:35:36 /usr/local/bin/git-annex assistant --startdelay=5s + 8058 13:00:11 S ? 00:00:28 \_ git --git-dir=/srv/mp3/.git --work-tree=/srv/mp3 cat-file --batch + 8130 13:00:21 S ? 00:00:41 \_ git --git-dir=/srv/mp3/.git --work-tree=/srv/mp3 check-ignore -z --stdin --verbose --non-matching + 8236 13:00:24 S ? 00:00:00 \_ git --git-dir=/srv/mp3/.git --work-tree=/srv/mp3 check-attr -z --stdin annex.backend annex.numcopies -- + 7107 12:58:40 S ? 00:00:02 /usr/lib/gvfs/gvfs-gdu-volume-monitor + 6525 12:57:25 S ? 07:29:13 /usr/local/bin/git-annex assistant --startdelay=5s + 6616 12:57:34 S ? 00:00:05 \_ git --git-dir=/srv/video/.git --work-tree=/srv/video cat-file --batch + 7285 12:58:45 S ? 00:00:01 \_ git --git-dir=/srv/video/.git --work-tree=/srv/video check-ignore -z --stdin --verbose --non-matching + 7434 12:58:51 S ? 00:00:00 \_ git --git-dir=/srv/video/.git --work-tree=/srv/video check-attr -z --stdin annex.backend annex.numcopies -- + 4209 19:30:17 S ? 00:01:06 \_ /usr/local/bin/git-annex transferkeys --readfd 25 --writefd 24 + 4240 19:30:17 S ? 00:00:00 \_ git --git-dir=/srv/video/.git --work-tree=/srv/video cat-file --batch +13761 23:56:38 Z ? 00:00:00 \_ [git] <defunct> + 6252 12:56:59 S ? 00:01:09 /usr/bin/emacs23 +"""]] |