Avoid using absolute paths when staging location log, as that can confuse git when a remote's path contains a symlink. Closes: #621386

This was a real PITA to fix, since location logs can be staged in
both the current repo, as well as in local remote's repos, in
which case the cwd will not be in the repo. And git add needs different
params in both cases, when absolute paths are not used.

In passing, git annex fsck now stages location log fixes.

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