Merge branch 'master' of ssh://git-annex.branchable.com

3 files changed, 119 insertions, 0 deletions

diff --git a/doc/bugs/when_syncing_a_direct_repository__44___git_annex_delete_non_annexed_new_git_files.mdwn b/doc/bugs/when_syncing_a_direct_repository__44___git_annex_delete_non_annexed_new_git_files.mdwn
new file mode 100644
index 000000000..ddb3f1399
--- /dev/null
+++ b/doc/bugs/when_syncing_a_direct_repository__44___git_annex_delete_non_annexed_new_git_files.mdwn
@@ -0,0 +1,53 @@
+### Please describe the problem.
+I've a undirect repository that I sync with a direct one (that is on a
+crippled filesystem). My repository contain tex file that are directly
+in git, and binary file that are annexed. 
+
+If I create or modify an standard git files in my undirect repository,
+then sync it with the direct repository, the new file is not created
+there, or the modified file is deleted there.
+
+
+### What steps will reproduce the problem?
+
+    $ cd direct
+    $ echo foo > bar.tex
+    $ git commit bar.tex -m "new tex file"
+    $ git annex sync
+    $ cd /media/direct-repo
+    $ git annex sync
+    $ ls bar.tex
+
+There the bar.tex file don't exist, and the next `git annex sync` will
+commit the change.
+
+The problem exist for some time (I first believed I add a problem with
+my usb stick), but now that direct repository are treated somewhat as
+bare repository, I don't know of an easy fix.
+
+### What version of git-annex are you using? On what operating system?
+
+On Debian, since at least git annex 5.20131120 I believe.
+
+### Please provide any additional information below.
+
+[[!format sh """
+# If you can, paste a complete transcript of the problem occurring here.
+# If the problem is with the git-annex assistant, paste in .git/annex/daemon.log
+mkdir direct
+cd direct
+git init && git annex init "direct"
+git annex direct
+cd ..
+git clone direct indirect
+cd indirect
+git annex init "indirect"
+echo bla > test.tex
+git add test.tex
+git commit -m "test"
+git annex sync
+cd ../direct
+git annex sync
+ls
+# End of transcript or log.
+"""]]
diff --git a/doc/bugs/when_syncing_a_direct_repository__44___git_annex_delete_non_annexed_new_git_files/comment_1_6c9f5fe14e46ac96254426e1e9cff23f._comment b/doc/bugs/when_syncing_a_direct_repository__44___git_annex_delete_non_annexed_new_git_files/comment_1_6c9f5fe14e46ac96254426e1e9cff23f._comment
new file mode 100644
index 000000000..b3f10176d
--- /dev/null
+++ b/doc/bugs/when_syncing_a_direct_repository__44___git_annex_delete_non_annexed_new_git_files/comment_1_6c9f5fe14e46ac96254426e1e9cff23f._comment
@@ -0,0 +1,8 @@
+[[!comment format=mdwn
+ username="https://www.google.com/accounts/o8/id?id=AItOawnm19dBCRphmtjXfopm_NpvnRwz-qIJ2Tw"
+ nickname="Remi"
+ subject="Checking out the file"
+ date="2013-12-03T10:29:40Z"
+ content="""
+If I run `GIT_WORK_TREE=/media/direct-repo git checkout bar.tex` I have my file back.
+"""]]
diff --git a/doc/forum/Can_Not_Sync_to_Git_Repo/comment_3_fb23d640f9634cab2da91848f1848627._comment b/doc/forum/Can_Not_Sync_to_Git_Repo/comment_3_fb23d640f9634cab2da91848f1848627._comment
new file mode 100644
index 000000000..10206a898
--- /dev/null
+++ b/doc/forum/Can_Not_Sync_to_Git_Repo/comment_3_fb23d640f9634cab2da91848f1848627._comment
@@ -0,0 +1,58 @@
+[[!comment format=mdwn
+ username="Remy"
+ ip="83.87.167.98"
+ subject="comment 3"
+ date="2013-12-03T08:35:21Z"
+ content="""
+> git-annex version
+
+	git-annex version: 5.20131117-gbd514dc
+	build flags: Assistant Webapp Pairing Testsuite S3 WebDAV FsEvents XMPP DNS Feeds Quvi TDFA CryptoHash
+	key/value backends: SHA256E SHA1E SHA512E SHA224E SHA384E SKEIN256E SKEIN512E SHA256 SHA1 SHA512 SHA224 SHA384 SKEIN256 SKEIN512 WORM URL
+	remote types: git gcrypt S3 bup directory rsync web webdav glacier hook
+	local repository version: 5
+	default repository version: 3
+	supported repository versions: 3 5
+	upgrade supported from repository versions: 0 1 2 4
+
+
+> git-annex sync --debug bonus_remote
+
+	[2013-12-03 09:23:07 CET] read: git [\"--git-dir=/Users/remy/Sync/.git\",\"--work-tree=/Users/remy/Sync\",\"show-ref\",\"git-annex\"]
+	[2013-12-03 09:23:07 CET] read: git [\"--git-dir=/Users/remy/Sync/.git\",\"--work-tree=/Users/remy/Sync\",\"show-ref\",\"--hash\",\"refs/heads/git-annex\"]
+	[2013-12-03 09:23:07 CET] read: git [\"--git-dir=/Users/remy/Sync/.git\",\"--work-tree=/Users/remy/Sync\",\"log\",\"refs/heads/git-annex..37a902328b4806d1549bf174241339432105d756\",\"--oneline\",\"-n1\"]
+	[2013-12-03 09:23:07 CET] read: git [\"--git-dir=/Users/remy/Sync/.git\",\"--work-tree=/Users/remy/Sync\",\"log\",\"refs/heads/git-annex..5e25b4c5c8c28d48b212c079767827e27819c379\",\"--oneline\",\"-n1\"]
+	[2013-12-03 09:23:07 CET] read: git [\"--git-dir=/Users/remy/Sync/.git\",\"--work-tree=/Users/remy/Sync\",\"log\",\"refs/heads/git-annex..2245416c2355c9e00f560bcde15b8856d8f924be\",\"--oneline\",\"-n1\"]
+	[2013-12-03 09:23:07 CET] read: git [\"--git-dir=/Users/remy/Sync/.git\",\"--work-tree=/Users/remy/Sync\",\"log\",\"refs/heads/git-annex..18e56479af7031d179cd4f4af4138b15211bea26\",\"--oneline\",\"-n1\"]
+	[2013-12-03 09:23:07 CET] read: git [\"--git-dir=/Users/remy/Sync/.git\",\"--work-tree=/Users/remy/Sync\",\"log\",\"refs/heads/git-annex..b74c5b5cfeecfeace64a4b31aabd7163c6c28f42\",\"--oneline\",\"-n1\"]
+	[2013-12-03 09:23:07 CET] read: git [\"--git-dir=/Users/remy/Sync/.git\",\"--work-tree=/Users/remy/Sync\",\"log\",\"refs/heads/git-annex..88fd933c3dbb56d2527c19d6b462c61d9213535c\",\"--oneline\",\"-n1\"]
+	[2013-12-03 09:23:07 CET] chat: git [\"--git-dir=/Users/remy/Sync/.git\",\"--work-tree=/Users/remy/Sync\",\"cat-file\",\"--batch\"]
+	[2013-12-03 09:23:07 CET] read: git [\"--git-dir=/Users/remy/Sync/.git\",\"--work-tree=/Users/remy/Sync\",\"ls-files\",\"--stage\",\"-z\",\"--others\",\"--exclude-standard\",\"--\",\"/Users/remy/Sync\"]
+	[2013-12-03 09:23:07 CET] chat: git [\"--git-dir=/Users/remy/Sync/.git\",\"--work-tree=/Users/remy/Sync\",\"cat-file\",\"--batch\"]
+	commit  
+	[2013-12-03 09:23:13 CET] read: git [\"--git-dir=/Users/remy/Sync/.git\",\"--work-tree=/Users/remy/Sync\",\"commit\",\"-m\",\"git-annex automatic sync\"]
+	ok
+	[2013-12-03 09:23:13 CET] read: git [\"--git-dir=/Users/remy/Sync/.git\",\"--work-tree=/Users/remy/Sync\",\"symbolic-ref\",\"HEAD\"]
+	[2013-12-03 09:23:13 CET] read: git [\"--git-dir=/Users/remy/Sync/.git\",\"--work-tree=/Users/remy/Sync\",\"show-ref\",\"refs/heads/master\"]
+	[2013-12-03 09:23:13 CET] call: git [\"--git-dir=/Users/remy/Sync/.git\",\"--work-tree=/Users/remy/Sync\",\"show-ref\",\"--verify\",\"-q\",\"refs/heads/synced/master\"]
+	[2013-12-03 09:23:13 CET] read: git [\"--git-dir=/Users/remy/Sync/.git\",\"--work-tree=/Users/remy/Sync\",\"log\",\"refs/heads/master..refs/heads/synced/master\",\"--oneline\",\"-n1\"]
+	pull bonus_remote 
+	[2013-12-03 09:23:13 CET] call: git [\"--git-dir=/Users/remy/Sync/.git\",\"--work-tree=/Users/remy/Sync\",\"fetch\",\"bonus_remote\"]
+	[2013-12-03 09:23:14 CET] call: git [\"--git-dir=/Users/remy/Sync/.git\",\"--work-tree=/Users/remy/Sync\",\"show-ref\",\"--verify\",\"-q\",\"refs/remotes/bonus_remote/master\"]
+	[2013-12-03 09:23:14 CET] read: git [\"--git-dir=/Users/remy/Sync/.git\",\"--work-tree=/Users/remy/Sync\",\"log\",\"refs/heads/master..refs/remotes/bonus_remote/master\",\"--oneline\",\"-n1\"]
+	[2013-12-03 09:23:14 CET] call: git [\"--git-dir=/Users/remy/Sync/.git\",\"--work-tree=/Users/remy/Sync\",\"show-ref\",\"--verify\",\"-q\",\"refs/remotes/bonus_remote/synced/master\"]
+	[2013-12-03 09:23:14 CET] read: git [\"--git-dir=/Users/remy/Sync/.git\",\"--work-tree=/Users/remy/Sync\",\"log\",\"refs/heads/synced/master..refs/remotes/bonus_remote/synced/master\",\"--oneline\",\"-n1\"]
+	ok
+	[2013-12-03 09:23:14 CET] read: git [\"--git-dir=/Users/remy/Sync/.git\",\"--work-tree=/Users/remy/Sync\",\"show-ref\",\"git-annex\"]
+	[2013-12-03 09:23:14 CET] read: git [\"--git-dir=/Users/remy/Sync/.git\",\"--work-tree=/Users/remy/Sync\",\"show-ref\",\"--hash\",\"refs/heads/git-annex\"]
+	[2013-12-03 09:23:14 CET] read: git [\"--git-dir=/Users/remy/Sync/.git\",\"--work-tree=/Users/remy/Sync\",\"log\",\"refs/heads/git-annex..37a902328b4806d1549bf174241339432105d756\",\"--oneline\",\"-n1\"]
+	[2013-12-03 09:23:14 CET] read: git [\"--git-dir=/Users/remy/Sync/.git\",\"--work-tree=/Users/remy/Sync\",\"log\",\"refs/heads/git-annex..5e25b4c5c8c28d48b212c079767827e27819c379\",\"--oneline\",\"-n1\"]
+	[2013-12-03 09:23:14 CET] read: git [\"--git-dir=/Users/remy/Sync/.git\",\"--work-tree=/Users/remy/Sync\",\"log\",\"refs/heads/git-annex..2245416c2355c9e00f560bcde15b8856d8f924be\",\"--oneline\",\"-n1\"]
+	[2013-12-03 09:23:14 CET] read: git [\"--git-dir=/Users/remy/Sync/.git\",\"--work-tree=/Users/remy/Sync\",\"log\",\"refs/heads/git-annex..18e56479af7031d179cd4f4af4138b15211bea26\",\"--oneline\",\"-n1\"]
+	[2013-12-03 09:23:14 CET] read: git [\"--git-dir=/Users/remy/Sync/.git\",\"--work-tree=/Users/remy/Sync\",\"log\",\"refs/heads/git-annex..b74c5b5cfeecfeace64a4b31aabd7163c6c28f42\",\"--oneline\",\"-n1\"]
+	[2013-12-03 09:23:14 CET] read: git [\"--git-dir=/Users/remy/Sync/.git\",\"--work-tree=/Users/remy/Sync\",\"log\",\"refs/heads/git-annex..88fd933c3dbb56d2527c19d6b462c61d9213535c\",\"--oneline\",\"-n1\"]
+	[2013-12-03 09:23:14 CET] call: git [\"--git-dir=/Users/remy/Sync/.git\",\"--work-tree=/Users/remy/Sync\",\"branch\",\"-f\",\"synced/master\"]
+	[2013-12-03 09:23:14 CET] call: git [\"--git-dir=/Users/remy/Sync/.git\",\"--work-tree=/Users/remy/Sync\",\"branch\",\"-f\",\"master\"]
+	fatal: Cannot force update the current branch.
+	git-annex: failed to update refs/heads/master
+"""]]