Merge branch 'master' of ssh://git-annex.branchable.com

8 files changed, 244 insertions, 25 deletions

diff --git a/doc/bugs/Cannot_build_with_aws_0.17.1/comment_1_937238ba11540f1ee9ba8de621277b2f._comment b/doc/bugs/Cannot_build_with_aws_0.17.1/comment_1_937238ba11540f1ee9ba8de621277b2f._comment
new file mode 100644
index 000000000..d22c31e9c
--- /dev/null
+++ b/doc/bugs/Cannot_build_with_aws_0.17.1/comment_1_937238ba11540f1ee9ba8de621277b2f._comment
@@ -0,0 +1,11 @@
+[[!comment format=mdwn
+ username="https://launchpad.net/~felixonmars"
+ nickname="felixonmars"
+ avatar="http://cdn.libravatar.org/avatar/17284a3bb2e4ad9d3be8fab31f49865be9c1dc22143c728de731fe800a335d38"
+ subject="comment 1"
+ date="2017-10-05T14:02:03Z"
+ content="""
+My humble workaround:
+
+    sed -i 's/let awscfg = AWS.Configuration AWS.Timestamp awscreds debugMapper$/let awscfg = AWS.Configuration AWS.Timestamp awscreds debugMapper Nothing/ ' Remote/S3.hs
+"""]]
diff --git a/doc/bugs/Upload_to_box_very_slow.mdwn b/doc/bugs/Upload_to_box_very_slow.mdwn
new file mode 100644
index 000000000..4668c80f8
--- /dev/null
+++ b/doc/bugs/Upload_to_box_very_slow.mdwn
@@ -0,0 +1,120 @@
+### Please describe the problem.
+
+In recent version of git-annex (including the most recent standalone version), uploading to box is slow. Typically, it will take 25 seconds or so for git-annex to begin the upload, whereas with previous versions it happened almost instantly.
+
+I used git bisect and rebuilds via stack to locate the commit that introduced this problem. This was the result:
+
+     Bisecting: 0 revisions left to test after this (roughly 0 steps)
+     [cf51f40f0eaed2c5968f35b94bebab4a1c819491] webdav: Changed path used on webdav server for temporary files.
+
+Please note: this is distinct from the bug I reported here (https://git-annex.branchable.com/bugs/git-annex_can_no_longer_copy_files_to_box/), since it also affects the standalone version.
+
+### What steps will reproduce the problem?
+
+Use a version of git annex built after the commit above from Sept. 15 (e.g., a recent standalone):
+
+Use a repo with a box remote set up with encryption and chunking:
+
+     WEBDAV_USERNAME=[username] WEBDAV_PASSWORD=[passwd] git annex initremote box type=webdav url=https://dav.box.com/dav/mystuff/annex chunk=100mb keyid=[keyid]
+
+     echo "Hello, world!" > test.txt
+     git add test.txt
+     git annex --verbose --debug copy -t box test.txt
+
+### What version of git-annex are you using? On what operating system?
+
+Tested with the nightly standalone build on arch linux:
+
+     git-annex version: 6.20171006-gbeca3ce2b
+     build flags: Assistant Webapp Pairing Testsuite S3(multipartupload)(storageclasses) WebDAV Inotify DBus DesktopNotify ConcurrentOutput TorrentParser MagicMime Feeds Quvi
+     dependency versions: aws-0.14.1 bloomfilter-2.0.1.0 cryptonite-0.20 DAV-1.3.1 feed-0.3.11.1 ghc-8.0.1 http-client-0.4.31.1 persistent-sqlite-2.6 torrent-10000.0.0 uuid-1.3.12 yesod-1.4.3
+     key/value backends: SHA256E SHA256 SHA512E SHA512 SHA224E SHA224 SHA384E SHA384 SHA3_256E SHA3_256 SHA3_512E SHA3_512 SHA3_224E SHA3_224 SHA3_384E SHA3_384 SKEIN256E SKEIN256 SKEIN512E SKEIN512 SHA1E SHA1 MD5E MD5 WORM URL
+     remote types: git gcrypt p2p S3 bup directory rsync web bittorrent webdav tahoe glacier ddar hook external
+
+### Please provide any additional information below.
+
+Here is the output:
+
+     % ~/git-annex.linux/git-annex --verbose --debug copy -t box  test.txt
+     [2017-10-07 10:13:25.283802979] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","show-ref","git-annex"]
+     [2017-10-07 10:13:25.294784901] process done ExitSuccess
+     [2017-10-07 10:13:25.295173712] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","show-ref","--hash","refs/heads/git-annex"]
+     [2017-10-07 10:13:25.305375915] process done ExitSuccess
+     [2017-10-07 10:13:25.306659057] chat: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","cat-file","--batch"]
+     [2017-10-07 10:13:25.307617362] chat: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","cat-file","--batch-check=%(objectname) %(objecttype) %(objectsize)"]
+     [2017-10-07 10:13:25.338084356] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","ls-files","--cached","-z","--","test.txt"]
+     copy test.txt [2017-10-07 10:13:25.360741244] chat: gpg ["--quiet","--trust-model","always","--decrypt"]
+     [2017-10-07 10:13:25.454260122] process done ExitSuccess
+     (checking box...) (to box...)
+     [2017-10-07 10:13:26.215000484] chat: gpg ["--quiet","--trust-model","always","--batch","--passphrase-fd","18","--symmetric","--force-mdc","--no-textmode"]
+     100%                2 B/s 7s[2017-10-07 10:13:58.059203157] process done ExitSuccess
+     ok
+
+Note the 32 second delay from 10:13:26 to 10:13:58 here
+
+     [2017-10-07 10:13:58.066819166] chat: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","hash-object","-w","--stdin-paths","--no-filters"]
+     [2017-10-07 10:13:58.067584497] feed: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","update-index","-z","--index-info"]
+     [2017-10-07 10:13:58.216568109] process done ExitSuccess
+     [2017-10-07 10:13:58.216839725] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","show-ref","--hash","refs/heads/git-annex"]
+     [2017-10-07 10:13:58.227738805] process done ExitSuccess
+     (recording state in git...)
+     [2017-10-07 10:13:58.227942884] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","write-tree"]
+     [2017-10-07 10:13:58.386915393] process done ExitSuccess
+     [2017-10-07 10:13:58.387325088] chat: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","commit-tree","bf90d33cdcf43119d2608e90fa6fdc23c497950d","--no-gpg-sign","-p","refs/heads/git-annex"]
+     [2017-10-07 10:13:58.400174021] process done ExitSuccess
+     [2017-10-07 10:13:58.400315661] call: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","update-ref","refs/heads/git-annex","b9583c0cf24933de01063281108f6d0c3a98053b"]
+     [2017-10-07 10:13:58.413220259] process done ExitSuccess
+     [2017-10-07 10:13:58.414476091] process done ExitSuccess
+     [2017-10-07 10:13:58.414890325] process done ExitSuccess
+     [2017-10-07 10:13:58.415545095] process done ExitSuccess
+
+Compare this with the results of git-annex built with stack that does not include the problematic commit:
+
+     git-annex version: 6.20170915-g122396029
+     build flags: Assistant Webapp Pairing Testsuite S3(multipartupload)(storageclasses) WebDAV Inotify ConcurrentOutput TorrentParser Feeds Quvi
+     dependency versions: aws-0.16 bloomfilter-2.0.1.0 cryptonite-0.21 DAV-1.3.1 feed-0.3.12.0 ghc-8.0.2 http-client-0.5.6.1 persistent-sqlite-2.6.2 torrent-10000.1.1 uuid-1.3.13 yesod-1.4.5
+     key/value backends: SHA256E SHA256 SHA512E SHA512 SHA224E SHA224 SHA384E SHA384 SHA3_256E SHA3_256 SHA3_512E SHA3_512 SHA3_224E SHA3_224 SHA3_384E SHA3_384 SKEIN256E SKEIN256 SKEIN512E SKEIN512 SHA1E SHA1 MD5E MD5 WORM URL
+     remote types: git gcrypt p2p S3 bup directory rsync web bittorrent webdav tahoe glacier ddar hook external
+     local repository version: 5
+     supported repository versions: 3 5 6
+     upgrade supported from repository versions: 0 1 2 3 4 5
+     operating system: linux x86_64
+
+Here is the output:
+
+     % git annex --verbose --debug copy -t box test.txt
+     [2017-10-07 10:51:28.863004037] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","show-ref","git-annex"]
+     [2017-10-07 10:51:28.866087687] process done ExitSuccess
+     [2017-10-07 10:51:28.866184907] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","show-ref","--hash","refs/heads/git-annex"]
+     [2017-10-07 10:51:28.868674623] process done ExitSuccess
+     [2017-10-07 10:51:28.869107711] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","log","refs/heads/git-annex..5cc79198b2eb9e281d64b9eed7b1b6a2e869fb20","--pretty=%H","-n1"]
+     [2017-10-07 10:51:28.87271685] process done ExitSuccess
+     [2017-10-07 10:51:28.873655522] chat: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","cat-file","--batch"]
+     [2017-10-07 10:51:28.874173468] chat: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","cat-file","--batch-check=%(objectname) %(objecttype) %(objectsize)"]
+     [2017-10-07 10:51:28.896038454] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","ls-files","--cached","-z","--","test.txt"]
+     copy test.txt [2017-10-07 10:51:28.909441282] chat: gpg ["--quiet","--trust-model","always","--decrypt"]
+     [2017-10-07 10:51:28.997627719] process done ExitSuccess
+     (checking box...) (to box...)
+     [2017-10-07 10:51:29.838627434] chat: gpg ["--quiet","--trust-model","always","--batch","--passphrase-fd","18","--symmetric","--force-mdc","--no-textmode"]
+     100%               85 B/s 0s[2017-10-07 10:51:34.465610054] process done ExitSuccess
+     ok
+
+Notice the 5 second gap here:
+
+
+     [2017-10-07 10:51:34.469743494] chat: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","hash-object","-w","--stdin-paths","--no-filters"]
+     [2017-10-07 10:51:34.47009347] feed: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","update-index","-z","--index-info"]
+     [2017-10-07 10:51:34.588535947] process done ExitSuccess
+     [2017-10-07 10:51:34.588699027] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","show-ref","--hash","refs/heads/git-annex"]
+     [2017-10-07 10:51:34.591436472] process done ExitSuccess
+     (recording state in git...)
+     [2017-10-07 10:51:34.59158293] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","write-tree"]
+     [2017-10-07 10:51:34.767927859] process done ExitSuccess
+     [2017-10-07 10:51:34.768081231] chat: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","commit-tree","b7c89dee187ca46d21ad05937d746acb149c323e","--no-gpg-sign","-p","refs/heads/git-annex"]
+     [2017-10-07 10:51:34.799274341] process done ExitSuccess
+     [2017-10-07 10:51:34.799458862] call: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","update-ref","refs/heads/git-annex","676897d54eeecff41c28432e903671400b3c0b84"]
+     [2017-10-07 10:51:34.802489572] process done ExitSuccess
+
+### Have you had any luck using git-annex before? (Sometimes we get tired of reading bug reports all day and a lil' positive end note does wonders)
+
+Yes! Thank you!
diff --git a/doc/bugs/get_-J___34__fails__34___to_get_files_with_the_same_key/comment_2_af7078b291d99569070f6a76579787aa._comment b/doc/bugs/get_-J___34__fails__34___to_get_files_with_the_same_key/comment_2_af7078b291d99569070f6a76579787aa._comment
new file mode 100644
index 000000000..3412f1cb1
--- /dev/null
+++ b/doc/bugs/get_-J___34__fails__34___to_get_files_with_the_same_key/comment_2_af7078b291d99569070f6a76579787aa._comment
@@ -0,0 +1,10 @@
+[[!comment format=mdwn
+ username="yarikoptic"
+ avatar="http://cdn.libravatar.org/avatar/f11e9c84cb18d26a1748c33b48c924b4"
+ subject="also the same for add"
+ date="2017-10-05T17:00:51Z"
+ content="""
+Hi Joey
+
+I did remember that we had something similar but forgot that it was for \"get\" -- now I was getting similar problem for \"add --jobs\".  Will this fix also work for it as well?
+"""]]
diff --git a/doc/bugs/get_-J___34__fails__34___to_get_files_with_the_same_key/comment_3_86e1be495262a7f57428e92eb27a559f._comment b/doc/bugs/get_-J___34__fails__34___to_get_files_with_the_same_key/comment_3_86e1be495262a7f57428e92eb27a559f._comment
new file mode 100644
index 000000000..066f8db4e
--- /dev/null
+++ b/doc/bugs/get_-J___34__fails__34___to_get_files_with_the_same_key/comment_3_86e1be495262a7f57428e92eb27a559f._comment
@@ -0,0 +1,47 @@
+[[!comment format=mdwn
+ username="yarikoptic"
+ avatar="http://cdn.libravatar.org/avatar/f11e9c84cb18d26a1748c33b48c924b4"
+ subject="comment 3"
+ date="2017-10-05T20:36:50Z"
+ content="""
+here, caught one for you for add (git annex version is tiny bit dated: 6.20170815+gitg22da64d0f-1~ndall+1 )
+[[!format sh \"\"\"
+(Pdb) print e.msg
+Failed to run ['git', '-c', 'receive.autogc=0', '-c', 'gc.auto=0', 'annex', 'add', '--json', '-J6', '082-sn/000001.dcm', '078-sn/000001.dcm', '080-sn/000002.dcm', '076-sn/000002.dcm', '080-sn/000004.dcm', '080-sn/000001.dcm', '079-sn/000003.dcm', '082-sn/000003.dcm', '073-sn/000002.dcm', '079-sn/000002.dcm', '079-sn/000001.dcm', '077-sn/000002.dcm', '074-sn/000001.dcm', '080-sn/000003.dcm', '077-sn/000001.dcm', '076-sn/000001.dcm', '081-sn/000002.dcm', '078-sn/000002.dcm', '081-sn/000001.dcm', '081-sn/000003.dcm', '073-sn/000001.dcm', '075-sn/000001.dcm', '079-sn/000004.dcm', '082-sn/000002.dcm', '075-sn/000002.dcm', '074-sn/000002.dcm'] under '/mnt/DICOM/test2/inbox/2016/12/12/unknown'. Exit code=1. out={\"command\":\"add\",\"success\":true,\"key\":\"MD5E-s193740--3da2e91e0888c05e01daf8ef9ae79570.dcm\",\"file\":\"076-sn/000002.dcm\"}
+{\"command\":\"add\",\"success\":true,\"key\":\"MD5E-s205064--851ce819ea44cabd66923d902e55cd2c.dcm\",\"file\":\"082-sn/000001.dcm\"}
+{\"command\":\"add\",\"success\":true,\"key\":\"MD5E-s226874--8acaba7ff0f57a3e69a5c1afb8bc0ba3.dcm\",\"file\":\"080-sn/000001.dcm\"}
+{\"command\":\"add\",\"success\":true,\"key\":\"MD5E-s193746--faf49ea7b403c8f6191fa5b7521ebbd5.dcm\",\"file\":\"078-sn/000001.dcm\"}
+{\"command\":\"add\",\"success\":true,\"key\":\"MD5E-s205066--c5af824ecd895a342cba7ffefe019fde.dcm\",\"file\":\"082-sn/000003.dcm\"}
+{\"command\":\"add\",\"success\":true,\"key\":\"MD5E-s226872--abdaf5312c4c11da68cc9aaead6bc93a.dcm\",\"file\":\"080-sn/000004.dcm\"}
+{\"command\":\"add\",\"success\":true,\"key\":\"MD5E-s226768--352d7bf9be4b45316cb75c2fc5bfbdd2.dcm\",\"file\":\"079-sn/000002.dcm\"}
+{\"command\":\"add\",\"success\":true,\"key\":\"MD5E-s226872--755e5e693b07fd7cab07fa55e0f17fd2.dcm\",\"file\":\"080-sn/000002.dcm\"}
+{\"command\":\"add\",\"success\":true,\"key\":\"MD5E-s193636--47816f992ddf6167549b0d20bf430036.dcm\",\"file\":\"073-sn/000002.dcm\"}
+{\"command\":\"add\",\"success\":true,\"key\":\"MD5E-s193750--465de1ebab376633842ac9e36f6fcc35.dcm\",\"file\":\"074-sn/000001.dcm\"}
+{\"command\":\"add\",\"success\":true,\"key\":\"MD5E-s226766--04006df494da6adbe7b3eea90e4dba1b.dcm\",\"file\":\"079-sn/000003.dcm\"}
+{\"command\":\"add\",\"success\":true,\"key\":\"MD5E-s226768--3624982179994bbaa781ee8c72c5d6b9.dcm\",\"file\":\"079-sn/000001.dcm\"}
+{\"command\":\"add\",\"success\":true,\"key\":\"MD5E-s193636--98a6efe8bea17485297e5d600c4c01e6.dcm\",\"file\":\"077-sn/000002.dcm\"}
+{\"command\":\"add\",\"success\":true,\"key\":\"MD5E-s193642--15770ed37bedb6bd90a7a4b39761a1fa.dcm\",\"file\":\"077-sn/000001.dcm\"}
+{\"command\":\"add\",\"success\":true,\"key\":\"MD5E-s226870--621a7d3a2be10b99d45a39ef2526ab1c.dcm\",\"file\":\"080-sn/000003.dcm\"}
+{\"command\":\"add\",\"success\":true,\"key\":\"MD5E-s204960--e28aac5eb5e52fe47c2671e8b87edc8c.dcm\",\"file\":\"081-sn/000002.dcm\"}
+{\"command\":\"add\",\"success\":true,\"key\":\"MD5E-s193750--25cadf2f0fc7a4ca324687a742a2d55e.dcm\",\"file\":\"076-sn/000001.dcm\"}
+{\"command\":\"add\",\"success\":true,\"key\":\"MD5E-s193740--0424fce22306f7590f6d94561eb74e93.dcm\",\"file\":\"078-sn/000002.dcm\"}
+{\"command\":\"add\",\"success\":true,\"key\":\"MD5E-s204956--039309e288379d98480390043ea84ecb.dcm\",\"file\":\"081-sn/000001.dcm\"}
+{\"command\":\"add\",\"success\":true,\"key\":\"MD5E-s204960--7b32e2620301909a74adea3d29c00ed5.dcm\",\"file\":\"081-sn/000003.dcm\"}
+{\"command\":\"add\",\"success\":true,\"key\":\"MD5E-s193646--ff7337b5330f852063652f1e75099b27.dcm\",\"file\":\"073-sn/000001.dcm\"}
+{\"command\":\"add\",\"success\":true,\"key\":\"MD5E-s226768--40821b65d32878f5859ed1b19c5633d0.dcm\",\"file\":\"079-sn/000004.dcm\"}
+{\"command\":\"add\",\"success\":true,\"key\":\"MD5E-s193646--02704fbd9d37349c4ee96c1509f1a20d.dcm\",\"file\":\"075-sn/000001.dcm\"}
+{\"command\":\"add\",\"success\":true,\"key\":\"MD5E-s193636--7c727d28c56da2476b744e8aca421b5c.dcm\",\"file\":\"075-sn/000002.dcm\"}
+{\"command\":\"add\",\"success\":true,\"key\":\"MD5E-s193740--c0b3731d6a46df9000df32eeb78ae894.dcm\",\"file\":\"074-sn/000002.dcm\"}
+{\"command\":\"add\",\"success\":true,\"key\":\"MD5E-s205066--11b6f6e4cb2f5879a530f83d288bb7fa.dcm\",\"file\":\"082-sn/000002.dcm\"}
+ err=git-annex: 075-sn/000001.dcm not found
+git-annex: add: 1 failed
+
+(Pdb)
+[1]+  Stopped                 ../test/addall.sh
+(dev) [yoh@rolando test2]$ ls -l '/mnt/DICOM/test2/inbox/2016/12/12/unknown/075-sn/000001.dcm'
+lrwxrwxrwx 1 yoh users 129 Dec 12  2016 /mnt/DICOM/test2/inbox/2016/12/12/unknown/075-sn/000001.dcm -> ../.git/annex/objects/ZQ/3G/MD5E-s193646--02704fbd9d37349c4ee96c1509f1a20d.dcm/MD5E-s193646--02704fbd9d37349c4ee96c1509f1a20d.dcm
+
+\"\"\"]]
+
+so it does report success in json, but complains in stderr that file is not found... I guess some race condition between workers so it manages to catch the moment when file is moved into a key or smth like that?
+"""]]
diff --git a/doc/bugs/get_-J___34__fails__34___to_get_files_with_the_same_key/comment_4_3428942e9b52091b2297cd9823f17219._comment b/doc/bugs/get_-J___34__fails__34___to_get_files_with_the_same_key/comment_4_3428942e9b52091b2297cd9823f17219._comment
new file mode 100644
index 000000000..e023db5e1
--- /dev/null
+++ b/doc/bugs/get_-J___34__fails__34___to_get_files_with_the_same_key/comment_4_3428942e9b52091b2297cd9823f17219._comment
@@ -0,0 +1,8 @@
+[[!comment format=mdwn
+ username="yarikoptic"
+ avatar="http://cdn.libravatar.org/avatar/f11e9c84cb18d26a1748c33b48c924b4"
+ subject="comment 4"
+ date="2017-10-06T00:38:25Z"
+ content="""
+verified that it is still the case with annex 6.20171001+gitg542d0649f-1~ndall+1
+"""]]
diff --git a/doc/bugs/git-annex_can_no_longer_copy_files_to_box.mdwn b/doc/bugs/git-annex_can_no_longer_copy_files_to_box.mdwn
index b1bef3b7f..529afcabd 100644
--- a/doc/bugs/git-annex_can_no_longer_copy_files_to_box.mdwn
+++ b/doc/bugs/git-annex_can_no_longer_copy_files_to_box.mdwn
@@ -2,7 +2,7 @@
 
 With the upgrade to git-annex 6.20170925 I can no longer copy files to box via webdav. I notice that the changelog suggests that there were many changes to the webdav backend, including a new path for temporary files and url-escaping of file names. I have been using webdav + Box successfully for almost two years. My box/webdav backed was set up with chunking and encryption:
 
-     WEBDAV_USERNAME=[username] WEBDAV_PASSWORD=[passwd] git annex initremote box type=webdav url=https://dav.box.com/dav/git-annex chunk=100mb keyid=[keyid]
+     WEBDAV_USERNAME=[username] WEBDAV_PASSWORD=[passwd] git annex initremote box type=webdav url=https://dav.box.com/dav/mystuff/annex chunk=100mb keyid=[keyid]
 
 Now when I try to add and copy a file to webdav I get the following error:
 
diff --git a/doc/bugs/git-annex_can_no_longer_copy_files_to_box/comment_6_11a5b8e90d7c5f3ec4bfe854b4778fea._comment b/doc/bugs/git-annex_can_no_longer_copy_files_to_box/comment_6_11a5b8e90d7c5f3ec4bfe854b4778fea._comment
new file mode 100644
index 000000000..476350de5
--- /dev/null
+++ b/doc/bugs/git-annex_can_no_longer_copy_files_to_box/comment_6_11a5b8e90d7c5f3ec4bfe854b4778fea._comment
@@ -0,0 +1,47 @@
+[[!comment format=mdwn
+ username="madalu"
+ avatar="http://cdn.libravatar.org/avatar/c00d4aa29fd053f08a2ef35531592914"
+ subject="comment 6"
+ date="2017-10-06T23:45:13Z"
+ content="""
+I had a chance to do some more testing. I build the latest git-annex using stack (after uninstalling the arch-linux git annex and all its dependencies). I was able to reproduce the bug with the build.
+
+git-annex version:
+
+     git-annex version: 6.20171006-g676000770
+     build flags: Assistant Webapp Pairing Testsuite S3(multipartupload)(storageclasses) WebDAV Inotify ConcurrentOutput TorrentParser Feeds Quvi
+     dependency versions: aws-0.16 bloomfilter-2.0.1.0 cryptonite-0.21 DAV-1.3.1 feed-0.3.12.0 ghc-8.0.2 http-client-0.5.6.1 persistent-sqlite-2.6.2 torrent-10000.1.1 uuid-1.3.13 yesod-1.4.5
+     key/value backends: SHA256E SHA256 SHA512E SHA512 SHA224E SHA224 SHA384E SHA384 SHA3_256E SHA3_256 SHA3_512E SHA3_512 SHA3_224E SHA3_224 SHA3_384E SHA3_384 SKEIN256E SKEIN256 SKEIN512E SKEIN512 SHA1E SHA1 MD5E MD5 WORM URL
+     remote types: git gcrypt p2p S3 bup directory rsync web bittorrent webdav tahoe glacier ddar hook external
+
+Steps to reproduce (assumes the webdav repo initiation from the original bug report):
+
+Create a file test.txt that contains \"Hello, world!\".
+
+     git add test.txt
+     git annex --verbose --debug copy -t box test.txt
+
+This results in:
+
+     [2017-10-06 18:32:00.036289708] read: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"show-ref\",\"git-annex\"]
+     [2017-10-06 18:32:00.039256791] process done ExitSuccess
+     [2017-10-06 18:32:00.039344582] read: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"show-ref\",\"--hash\",\"refs/heads/git-annex\"]
+     [2017-10-06 18:32:00.041786875] process done ExitSuccess
+     [2017-10-06 18:32:00.042888138] chat: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"cat-file\",\"--batch\"]
+     [2017-10-06 18:32:00.043236927] chat: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"cat-file\",\"--batch-check=%(objectname) %(objecttype) %(objectsize)\"]
+     [2017-10-06 18:32:00.064572923] read: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"ls-files\",\"--cached\",\"-z\",\"--\",\"test.txt\"]
+     copy test.txt [2017-10-06 18:32:00.078377684] chat: gpg [\"--quiet\",\"--trust-model\",\"always\",\"--decrypt\"]
+     [2017-10-06 18:32:00.16669294] process done ExitSuccess
+     (checking box...) (to box...)
+     [2017-10-06 18:32:01.195900381] chat: gpg  [\"--quiet\",\"--trust-model\",\"always\",\"--batch\",\"--passphrase-fd\",\"19\",\"--symmetric\",\"--force-mdc\",\"--no-textmode\"]
+     [2017-10-06 18:32:32.159837783] process done ExitSuccess
+
+       DAV failure: Status {statusCode = 405, statusMessage = \"Method Not Allowed\"} \"<?xml version=\\"1.0\\" encoding=\\"utf-8\\"?>\n<d:error xmlns:d=\\"DAV:\\" xmlns:s=\\"http://sabredav.org/ns\\">\n  <s:exception>Sabre_DAV_Exception_MethodNotAllowed</s:exception>\n  <s:message>The resource you tried to create already exists</s:message>\n</d:error>\n\" HTTP request: \"MKCOL\" \"/dav/mystuff/annex/.\"
+     failed
+     [2017-10-06 18:32:32.163143388] process done ExitSuccess
+     [2017-10-06 18:32:32.163958789] process done ExitSuccess
+     git-annex: copy: 1 failed
+
+
+
+"""]]
diff --git a/doc/bugs/git-annex_can_no_longer_copy_files_to_box/comment_6_19fbb869d8819496cc428b47b63ac64a._comment b/doc/bugs/git-annex_can_no_longer_copy_files_to_box/comment_6_19fbb869d8819496cc428b47b63ac64a._comment
deleted file mode 100644
index e0a503864..000000000
--- a/doc/bugs/git-annex_can_no_longer_copy_files_to_box/comment_6_19fbb869d8819496cc428b47b63ac64a._comment
+++ /dev/null
@@ -1,24 +0,0 @@
-[[!comment format=mdwn
- username="madalu"
- avatar="http://cdn.libravatar.org/avatar/c00d4aa29fd053f08a2ef35531592914"
- subject="comment 6"
- date="2017-09-30T03:07:30Z"
- content="""
-Comparing git annex log and my arch linux install (i.e., pacman) logs, I can see that I was still able to copy files to box after upgrading (on 9/21) to haskell-dav 1.3.1-158 (linked to in your comment) and git-annex 6.20170818-19, both of which were built against aeson 1.2.2.0. So it may be that Dav is not the problem, despite the fact that this is a webdav issue. 
-
-Through examination of the logs, I find that this issue occurred immediately upon upgrading to git-annex 6.20170925-1. I'm not sure how to test this further.
-
-For the record, here are the libraries (immediate dependencies) where standalone and arch git-annex report different versions:
-
-aws (0.14.1 vs. 0.16),
-cryptonite (0.20 vs. 0.24),
-feed (0.3.11.1 vs. 1.0.0.0),
-ghc (8.0.1 vs. 8.2.1),
-http-client (0.4.31.1 vs. 0.5.7.0),
-persistent-sqlite (2.6 vs. 2.6.2),
-uuid (1.3.12 vs. 1.3.13),
-yesod (1.4.3 vs. 1.4.5)
-
-
-
-"""]]