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+[[!comment format=mdwn
+ username="arand"
+ ip="130.243.226.21"
+ subject="comment 5"
+ date="2013-08-12T21:50:47Z"
+ content="""
+Hmm, I think I see it now, you were missing a `rm` command in the log, and I had no idea the pre-commit hook existed :)
+
+This reproduces the issue, and it seems to indeed be a bug in the git-annex pre-commit handling, nice catch.
+
+<pre>
+$ git init temp
+Initialized empty Git repository in /home/arand/tmp/temp/.git/
+$ cd temp && git annex init
+init  ok
+(Recording state in git...)
+$ ln -s broken link
+$ git add .
+$ git commit -m\"add broken link\"
+[master (root-commit) 8125488] add broken link
+ 1 file changed, 1 insertion(+)
+ create mode 120000 link
+$ rm link
+$ echo \"actual file\" >link
+$ git add .
+$ git commit -m\"replace link with real file\"
+add link (checksum...) ok
+ok
+(Recording state in git...)
+[master b58b068] replace link with real file
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+$ git diff HEAD~ | cat
+diff --git a/link b/link
+index 86a410d..4104f6e 120000
+--- a/link
++++ b/link
+@@ -1 +1 @@
+-broken
+\ No newline at end of file
++.git/annex/objects/v4/GQ/SHA256E-s12--ef29ded6f5ae80d89a838d37e01ed3efaade7a2994aff87d1100697554b7327b/SHA256E-s12--ef29ded6f5ae80d89a838d37e01ed3efaade7a2994aff87d1100697554b7327b
+\ No newline at end of file
+$
+</pre>
+
+
+
+"""]]