broke subcommands out into separate modules

14 files changed, 780 insertions, 556 deletions

diff --git a/CmdLine.hs b/CmdLine.hs
new file mode 100644
index 000000000..494da2873
--- /dev/null
+++ b/CmdLine.hs
@@ -0,0 +1,201 @@
+{- git-annex command line
+ -
+ - Copyright 2010 Joey Hess <joey@kitenet.net>
+ -
+ - Licensed under the GNU GPL version 3 or higher.
+ -}
+
+module CmdLine (parseCmd) where
+
+import System.Console.GetOpt
+import Control.Monad.State (liftIO)
+import System.Directory
+import Data.String.Utils
+import Control.Monad (filterM)
+import Monad (when)
+
+import qualified GitRepo as Git
+import qualified Annex
+import Locations
+import qualified Backend
+import Types
+import Core
+
+import Command
+import qualified Command.Add
+import qualified Command.Unannex
+import qualified Command.Drop
+import qualified Command.Move
+import qualified Command.Get
+import qualified Command.FromKey
+import qualified Command.DropKey
+import qualified Command.SetKey
+import qualified Command.Fix
+import qualified Command.Init
+
+data SubCommand = SubCommand {
+	subcmdname :: String,
+	subcmdparams :: String,
+	subcmdseek :: SubCmdSeek,
+	subcmddesc :: String
+}
+subCmds :: [SubCommand]
+subCmds =  [
+	  (SubCommand "add" path	(withFilesNotInGit Command.Add.start)
+		"add files to annex")
+	, (SubCommand "get" path	(withFilesInGit Command.Get.start)
+		"make content of annexed files available")
+	, (SubCommand "drop" path	(withFilesInGit Command.Drop.start)
+		"indicate content of files not currently wanted")
+	, (SubCommand "move" path	(withFilesInGit Command.Move.start)
+		"transfer content of files to/from another repository")
+	, (SubCommand "init" desc	(withDescription Command.Init.start)
+		"initialize git-annex with repository description")
+	, (SubCommand "unannex" path	(withFilesInGit Command.Unannex.start)
+		"undo accidential add command")
+	, (SubCommand "fix" path	(withFilesInGit Command.Fix.start)
+		"fix up symlinks to point to annexed content")
+	, (SubCommand "pre-commit" path (withFilesToBeCommitted Command.Fix.start)
+		"fix up symlinks before they are committed")
+	, (SubCommand "fromkey" key	(withFilesMissing Command.FromKey.start)
+		"adds a file using a specific key")
+	, (SubCommand "dropkey"	key	(withKeys Command.DropKey.start)
+		"drops annexed content for specified keys")
+	, (SubCommand "setkey" key	(withTempFile Command.SetKey.start)
+		"sets annexed content for a key using a temp file")
+	]
+	where
+		path = "PATH ..."
+		key = "KEY ..."
+		desc = "DESCRIPTION"
+
+-- Each dashed command-line option results in generation of an action
+-- in the Annex monad that performs the necessary setting.
+options :: [OptDescr (Annex ())]
+options = [
+	    Option ['f'] ["force"] (NoArg (storebool "force" True))
+		"allow actions that may lose annexed data"
+	  , Option ['q'] ["quiet"] (NoArg (storebool "quiet" True))
+		"avoid verbose output"
+	  , Option ['v'] ["verbose"] (NoArg (storebool "quiet" False))
+		"allow verbose output"
+	  , Option ['b'] ["backend"] (ReqArg (storestring "backend") "NAME")
+		"specify default key-value backend to use"
+	  , Option ['k'] ["key"] (ReqArg (storestring "key") "KEY")
+		"specify a key to use"
+	  , Option ['t'] ["to"] (ReqArg (storestring "torepository") "REPOSITORY")
+		"specify to where to transfer content"
+	  , Option ['f'] ["from"] (ReqArg (storestring "fromrepository") "REPOSITORY")
+		"specify from where to transfer content"
+	  ]
+	where
+		storebool n b = Annex.flagChange n $ FlagBool b
+		storestring n s = Annex.flagChange n $ FlagString s
+
+header :: String
+header = "Usage: git-annex " ++ (join "|" $ map subcmdname subCmds)
+
+{- Usage message with lists of options and subcommands. -}
+usage :: String
+usage = usageInfo header options ++ "\nSubcommands:\n" ++ cmddescs
+	where
+		cmddescs = unlines $ map (\c -> indent $ showcmd c) subCmds
+		showcmd c =
+			(subcmdname c) ++
+			(pad 11 (subcmdname c)) ++
+			(subcmdparams c) ++
+			(pad 13 (subcmdparams c)) ++
+			(subcmddesc c)
+		indent l = "  " ++ l
+		pad n s = take (n - (length s)) $ repeat ' '
+
+{- Prepares a list of actions to run to perform a subcommand, based on
+ - the parameters passed to it. -}
+prepSubCmd :: SubCommand -> AnnexState -> [String] -> IO [Annex Bool]
+prepSubCmd SubCommand { subcmdseek = seek } state params = do
+	list <- Annex.eval state $ seek params
+	return $ map (\a -> doSubCmd a) list
+
+{- Runs a subcommand through the start, perform and cleanup stages -}
+doSubCmd :: SubCmdStart -> SubCmdCleanup
+doSubCmd start = do
+	s <- start
+	case (s) of
+		Nothing -> return True
+		Just perform -> do
+			p <- perform
+			case (p) of
+				Nothing -> do
+					showEndFail
+					return False
+				Just cleanup -> do
+					c <- cleanup
+					if (c)
+						then do
+							showEndOk
+							return True
+						else do
+							showEndFail
+							return False
+
+{- These functions find appropriate files or other things based on a
+   user's parameters. -}
+withFilesNotInGit :: SubCmdSeekBackendFiles
+withFilesNotInGit a params = do
+	repo <- Annex.gitRepo
+	files <- liftIO $ mapM (Git.notInRepo repo) params
+	let files' = foldl (++) [] files
+	pairs <- Backend.chooseBackends files'
+	return $ map a $ filter (\(f,_) -> notState f) pairs
+withFilesInGit :: SubCmdSeekStrings
+withFilesInGit a params = do
+	repo <- Annex.gitRepo
+	files <- liftIO $ mapM (Git.inRepo repo) params
+	return $ map a $ filter notState $ foldl (++) [] files
+withFilesMissing :: SubCmdSeekStrings
+withFilesMissing a params = do
+	files <- liftIO $ filterM missing params
+	return $ map a $ filter notState files
+	where
+		missing f = do
+			e <- doesFileExist f
+			return $ not e
+withDescription :: SubCmdSeekStrings
+withDescription a params = do
+	return $ [a $ unwords params]
+withFilesToBeCommitted :: SubCmdSeekStrings
+withFilesToBeCommitted a params = do
+	repo <- Annex.gitRepo
+	files <- liftIO $ mapM (Git.stagedFiles repo) params
+	return $ map a $ filter notState $ foldl (++) [] files
+withKeys :: SubCmdSeekStrings
+withKeys a params = return $ map a params
+withTempFile :: SubCmdSeekStrings
+withTempFile a params = return $ map a params
+
+{- filter out files from the state directory -}
+notState :: FilePath -> Bool
+notState f = stateLoc /= take (length stateLoc) f
+
+{- Parses command line and returns two lists of actions to be 
+ - run in the Annex monad. The first actions configure it
+ - according to command line options, while the second actions
+ - handle subcommands. -}
+parseCmd :: [String] -> AnnexState -> IO ([Annex Bool], [Annex Bool])
+parseCmd argv state = do
+	(flags, params) <- getopt
+	when (null params) $ error usage
+	case lookupCmd (params !! 0) of
+		[] -> error usage
+		[subcommand] -> do
+			actions <- prepSubCmd subcommand state (drop 1 params)
+			let configactions = map (\flag -> do
+				flag
+				return True) flags
+			return (configactions, actions)
+		_ -> error "internal error: multiple matching subcommands"
+	where
+		getopt = case getOpt Permute options argv of
+			(flags, params, []) -> return (flags, params)
+			(_, _, errs) -> ioError (userError (concat errs ++ usage))
+		lookupCmd cmd = filter (\c -> cmd  == subcmdname c) subCmds
diff --git a/Command.hs b/Command.hs
new file mode 100644
index 000000000..3d1e75e5f
--- /dev/null
+++ b/Command.hs
@@ -0,0 +1,50 @@
+{- git-annex command types
+ -
+ - Copyright 2010 Joey Hess <joey@kitenet.net>
+ -
+ - Licensed under the GNU GPL version 3 or higher.
+ -}
+
+module Command where
+
+import Types
+import Backend
+
+{- A subcommand runs in four stages.
+ -
+ - 0. The seek stage takes the parameters passed to the subcommand,
+ -    looks through the repo to find the ones that are relevant
+ -    to that subcommand (ie, new files to add), and generates
+ -    a list of start stage actions. -}
+type SubCmdSeek = [String] -> Annex [SubCmdStart]
+{- 1. The start stage is run before anything is printed about the
+  -   subcommand, is passed some input, and can early abort it
+  -   if the input does not make sense. It should run quickly and
+  -   should not modify Annex state. -}
+type SubCmdStart = Annex (Maybe SubCmdPerform)
+{- 2. The perform stage is run after a message is printed about the subcommand
+ -    being run, and it should be where the bulk of the work happens. -}
+type SubCmdPerform = Annex (Maybe SubCmdCleanup)
+{- 3. The cleanup stage is run only if the perform stage succeeds, and it
+ -    returns the overall success/fail of the subcommand. -}
+type SubCmdCleanup = Annex Bool
+{- Some helper functions are used to build up SubCmdSeek and SubCmdStart
+ - functions. -}
+type SubCmdSeekStrings = SubCmdStartString -> SubCmdSeek
+type SubCmdStartString = String -> SubCmdStart
+type SubCmdSeekBackendFiles = SubCmdStartBackendFile -> SubCmdSeek
+type SubCmdStartBackendFile = (FilePath, Maybe Backend) -> SubCmdStart
+
+notAnnexed :: FilePath -> Annex (Maybe a) -> Annex (Maybe a)
+notAnnexed file a = do
+	r <- Backend.lookupFile file
+	case (r) of
+		Just _ -> return Nothing
+		Nothing -> a
+
+isAnnexed :: FilePath -> ((Key, Backend) -> Annex (Maybe a)) -> Annex (Maybe a)
+isAnnexed file a = do
+	r <- Backend.lookupFile file
+	case (r) of
+		Just v -> a v
+		Nothing -> return Nothing
diff --git a/Command/Add.hs b/Command/Add.hs
new file mode 100644
index 000000000..825c1d8c1
--- /dev/null
+++ b/Command/Add.hs
@@ -0,0 +1,52 @@
+{- git-annex command
+ -
+ - Copyright 2010 Joey Hess <joey@kitenet.net>
+ -
+ - Licensed under the GNU GPL version 3 or higher.
+ -}
+
+module Command.Add where
+
+import Control.Monad.State (liftIO)
+import System.Posix.Files
+import System.Directory
+
+import Command
+import qualified Annex
+import Utility
+import Locations
+import qualified Backend
+import LocationLog
+import Types
+import Core
+
+{- The add subcommand annexes a file, storing it in a backend, and then
+ - moving it into the annex directory and setting up the symlink pointing
+ - to its content. -}
+start :: SubCmdStartBackendFile
+start pair@(file, _) = notAnnexed file $ do
+	s <- liftIO $ getSymbolicLinkStatus file
+	if ((isSymbolicLink s) || (not $ isRegularFile s))
+		then return Nothing
+		else do
+			showStart "add" file
+			return $ Just $ perform pair
+
+perform :: (FilePath, Maybe Backend) -> SubCmdPerform
+perform (file, backend) = do
+	stored <- Backend.storeFileKey file backend
+	case (stored) of
+		Nothing -> return Nothing
+		Just (key, _) -> return $ Just $ cleanup file key
+
+cleanup :: FilePath -> Key -> SubCmdCleanup
+cleanup file key = do
+	logStatus key ValuePresent
+	g <- Annex.gitRepo
+	let dest = annexLocation g key
+	liftIO $ createDirectoryIfMissing True (parentDir dest)
+	liftIO $ renameFile file dest
+	link <- calcGitLink file key
+	liftIO $ createSymbolicLink link file
+	Annex.queue "add" [] file
+	return True
diff --git a/Command/Drop.hs b/Command/Drop.hs
new file mode 100644
index 000000000..6cdf216f4
--- /dev/null
+++ b/Command/Drop.hs
@@ -0,0 +1,50 @@
+{- git-annex command
+ -
+ - Copyright 2010 Joey Hess <joey@kitenet.net>
+ -
+ - Licensed under the GNU GPL version 3 or higher.
+ -}
+
+module Command.Drop where
+
+import Control.Monad.State (liftIO)
+import System.Directory
+
+import Command
+import qualified Annex
+import Locations
+import qualified Backend
+import LocationLog
+import Types
+import Core
+
+{- Indicates a file's content is not wanted anymore, and should be removed
+ - if it's safe to do so. -}
+start :: SubCmdStartString
+start file = isAnnexed file $ \(key, backend) -> do
+	inbackend <- Backend.hasKey key
+	if (not inbackend)
+		then return Nothing
+		else do
+			showStart "drop" file
+			return $ Just $ perform key backend
+
+perform :: Key -> Backend -> SubCmdPerform
+perform key backend = do
+	success <- Backend.removeKey backend key
+	if (success)
+		then return $ Just $ cleanup key
+		else return Nothing
+
+cleanup :: Key -> SubCmdCleanup
+cleanup key = do
+	logStatus key ValueMissing
+	inannex <- inAnnex key
+	if (inannex)
+		then do
+			g <- Annex.gitRepo
+			let loc = annexLocation g key
+			liftIO $ removeFile loc
+			return True
+		else return True
+
diff --git a/Command/DropKey.hs b/Command/DropKey.hs
new file mode 100644
index 000000000..bdd9b55b1
--- /dev/null
+++ b/Command/DropKey.hs
@@ -0,0 +1,47 @@
+{- git-annex command
+ -
+ - Copyright 2010 Joey Hess <joey@kitenet.net>
+ -
+ - Licensed under the GNU GPL version 3 or higher.
+ -}
+
+module Command.DropKey where
+
+import Control.Monad.State (liftIO)
+import System.Directory
+
+import Command
+import qualified Annex
+import Locations
+import qualified Backend
+import LocationLog
+import Types
+import Core
+
+{- Drops cached content for a key. -}
+start :: SubCmdStartString
+start keyname = do
+	backends <- Backend.list
+	let key = genKey (backends !! 0) keyname
+	present <- inAnnex key
+	force <- Annex.flagIsSet "force"
+	if (not present)
+		then return Nothing
+		else if (not force)
+			then error "dropkey is can cause data loss; use --force if you're sure you want to do this"
+			else do
+				showStart "dropkey" keyname
+				return $ Just $ perform key
+
+perform :: Key -> SubCmdPerform
+perform key = do
+	g <- Annex.gitRepo
+	let loc = annexLocation g key
+	liftIO $ removeFile loc
+	return $ Just $ cleanup key
+
+cleanup :: Key -> SubCmdCleanup
+cleanup key = do
+	logStatus key ValueMissing
+	return True
+
diff --git a/Command/Fix.hs b/Command/Fix.hs
new file mode 100644
index 000000000..90257a8a5
--- /dev/null
+++ b/Command/Fix.hs
@@ -0,0 +1,40 @@
+{- git-annex command
+ -
+ - Copyright 2010 Joey Hess <joey@kitenet.net>
+ -
+ - Licensed under the GNU GPL version 3 or higher.
+ -}
+
+module Command.Fix where
+
+import Control.Monad.State (liftIO)
+import System.Posix.Files
+import System.Directory
+
+import Command
+import qualified Annex
+import Utility
+import Core
+
+{- Fixes the symlink to an annexed file. -}
+start :: SubCmdStartString
+start file = isAnnexed file $ \(key, _) -> do
+	link <- calcGitLink file key
+	l <- liftIO $ readSymbolicLink file
+	if (link == l)
+		then return Nothing
+		else do
+			showStart "fix" file
+			return $ Just $ perform file link
+
+perform :: FilePath -> FilePath -> SubCmdPerform
+perform file link = do
+	liftIO $ createDirectoryIfMissing True (parentDir file)
+	liftIO $ removeFile file
+	liftIO $ createSymbolicLink link file
+	return $ Just $ cleanup file
+
+cleanup :: FilePath -> SubCmdCleanup
+cleanup file = do
+	Annex.queue "add" [] file
+	return True
diff --git a/Command/FromKey.hs b/Command/FromKey.hs
new file mode 100644
index 000000000..3071f218f
--- /dev/null
+++ b/Command/FromKey.hs
@@ -0,0 +1,44 @@
+{- git-annex command
+ -
+ - Copyright 2010 Joey Hess <joey@kitenet.net>
+ -
+ - Licensed under the GNU GPL version 3 or higher.
+ -}
+
+module Command.FromKey where
+
+import Control.Monad.State (liftIO)
+import System.Posix.Files
+import System.Directory
+import Control.Monad (when, unless)
+
+import Command
+import qualified Annex
+import Utility
+import qualified Backend
+import Types
+import Core
+
+{- Adds a file pointing at a manually-specified key -}
+start :: SubCmdStartString
+start file = do
+	keyname <- Annex.flagGet "key"
+	when (null keyname) $ error "please specify the key with --key"
+	backends <- Backend.list
+	let key = genKey (backends !! 0) keyname
+
+	inbackend <- Backend.hasKey key
+	unless (inbackend) $ error $
+		"key ("++keyname++") is not present in backend"
+	showStart "fromkey" file
+	return $ Just $ perform file key
+perform :: FilePath -> Key -> SubCmdPerform
+perform file key = do
+	link <- calcGitLink file key
+	liftIO $ createDirectoryIfMissing True (parentDir file)
+	liftIO $ createSymbolicLink link file
+	return $ Just $ cleanup file
+cleanup :: FilePath -> SubCmdCleanup
+cleanup file = do
+	Annex.queue "add" [] file
+	return True
diff --git a/Command/Get.hs b/Command/Get.hs
new file mode 100644
index 000000000..1433bc8d0
--- /dev/null
+++ b/Command/Get.hs
@@ -0,0 +1,31 @@
+{- git-annex command
+ -
+ - Copyright 2010 Joey Hess <joey@kitenet.net>
+ -
+ - Licensed under the GNU GPL version 3 or higher.
+ -}
+
+module Command.Get where
+
+import Command
+import qualified Backend
+import Types
+import Core
+
+{- Gets an annexed file from one of the backends. -}
+start :: SubCmdStartString
+start file = isAnnexed file $ \(key, backend) -> do
+	inannex <- inAnnex key
+	if (inannex)
+		then return Nothing
+		else do
+			showStart "get" file
+			return $ Just $ perform key backend
+
+perform :: Key -> Backend -> SubCmdPerform
+perform key backend = do
+	ok <- getViaTmp key (Backend.retrieveKeyFile backend key)
+	if (ok)
+		then return $ Just $ return True -- no cleanup needed
+		else return Nothing
+
diff --git a/Command/Init.hs b/Command/Init.hs
new file mode 100644
index 000000000..b1e4e0e06
--- /dev/null
+++ b/Command/Init.hs
@@ -0,0 +1,42 @@
+{- git-annex command
+ -
+ - Copyright 2010 Joey Hess <joey@kitenet.net>
+ -
+ - Licensed under the GNU GPL version 3 or higher.
+ -}
+
+module Command.Init where
+
+import Control.Monad.State (liftIO)
+import Control.Monad (when)
+
+import Command
+import qualified Annex
+import Core
+import qualified GitRepo as Git
+import UUID
+
+{- Stores description for the repository etc. -}
+start :: SubCmdStartString
+start description = do
+	when (null description) $ error $
+		"please specify a description of this repository\n"
+	showStart "init" description
+	return $ Just $ perform description
+
+perform :: String -> SubCmdPerform
+perform description = do
+	g <- Annex.gitRepo
+	u <- getUUID g
+	describeUUID u description
+	liftIO $ gitAttributes g
+	liftIO $ gitPreCommitHook g
+	return $ Just $ cleanup
+
+cleanup :: SubCmdCleanup
+cleanup = do
+	g <- Annex.gitRepo
+	logfile <- uuidLog
+	liftIO $ Git.run g ["add", logfile]
+	liftIO $ Git.run g ["commit", "-m", "git annex init", logfile]
+	return True
diff --git a/Command/Move.hs b/Command/Move.hs
new file mode 100644
index 000000000..cee941622
--- /dev/null
+++ b/Command/Move.hs
@@ -0,0 +1,131 @@
+{- git-annex command
+ -
+ - Copyright 2010 Joey Hess <joey@kitenet.net>
+ -
+ - Licensed under the GNU GPL version 3 or higher.
+ -}
+
+module Command.Move where
+
+import Control.Monad.State (liftIO)
+import Monad (when)
+
+import Command
+import Command.Drop
+import qualified Annex
+import Locations
+import LocationLog
+import Types
+import Core
+import qualified GitRepo as Git
+import qualified Remotes
+import UUID
+
+{- Move a file either --to or --from a repository.
+ -
+ - This only operates on the cached file content; it does not involve
+ - moving data in the key-value backend. -}
+start :: SubCmdStartString
+start file = do
+	fromName <- Annex.flagGet "fromrepository"
+	toName <- Annex.flagGet "torepository"
+	case (fromName, toName) of
+		("", "") -> error "specify either --from or --to"
+		("",  _) -> moveToStart file
+		(_ , "") -> moveFromStart file
+		(_ ,  _) -> error "only one of --from or --to can be specified"
+
+{- Moves the content of an annexed file to another repository,
+ - removing it from the current repository, and updates locationlog
+ - information on both.
+ -
+ - If the destination already has the content, it is still removed
+ - from the current repository.
+ -
+ - Note that unlike drop, this does not honor annex.numcopies.
+ - A file's content can be moved even if there are insufficient copies to
+ - allow it to be dropped.
+ -}
+moveToStart :: SubCmdStartString
+moveToStart file = isAnnexed file $ \(key, _) -> do
+	ishere <- inAnnex key
+	if (not ishere)
+		then return Nothing -- not here, so nothing to do
+		else do
+			showStart "move" file
+			return $ Just $ moveToPerform key
+moveToPerform :: Key -> SubCmdPerform
+moveToPerform key = do
+	-- checking the remote is expensive, so not done in the start step
+	remote <- Remotes.commandLineRemote
+	isthere <- Remotes.inAnnex remote key
+	case isthere of
+		Left err -> do
+			showNote $ show err
+			return Nothing
+		Right False -> do
+			Core.showNote $ "moving to " ++ (Git.repoDescribe remote) ++ "..."
+			let tmpfile = (annexTmpLocation remote) ++ (keyFile key)
+			ok <- Remotes.copyToRemote remote key tmpfile
+			if (ok)
+				then return $ Just $ moveToCleanup remote key tmpfile
+				else return Nothing -- failed
+		Right True -> return $ Just $ Command.Drop.cleanup key
+moveToCleanup :: Git.Repo -> Key -> FilePath -> SubCmdCleanup
+moveToCleanup remote key tmpfile = do
+	-- Tell remote to use the transferred content.
+	ok <- Remotes.runCmd remote "git-annex" ["setkey", "--quiet",
+		"--backend=" ++ (backendName key),
+		"--key=" ++ keyName key,
+		tmpfile]
+	if ok
+		then do
+			-- Record that the key is present on the remote.
+			g <- Annex.gitRepo
+			remoteuuid <- getUUID remote
+			logfile <- liftIO $ logChange g key remoteuuid ValuePresent
+			Annex.queue "add" [] logfile
+			-- Cleanup on the local side is the same as done for the
+			-- drop subcommand.
+			Command.Drop.cleanup key
+		else return False
+
+{- Moves the content of an annexed file from another repository to the current
+ - repository and updates locationlog information on both.
+ -
+ - If the current repository already has the content, it is still removed
+ - from the other repository.
+ -}
+moveFromStart :: SubCmdStartString
+moveFromStart file = isAnnexed file $ \(key, _) -> do
+	remote <- Remotes.commandLineRemote
+	l <- Remotes.keyPossibilities key
+	if (null $ filter (\r -> Remotes.same r remote) l)
+		then return Nothing
+		else do
+			showStart "move" file
+			return $ Just $ moveFromPerform key
+moveFromPerform :: Key -> SubCmdPerform
+moveFromPerform key = do
+	remote <- Remotes.commandLineRemote
+	ishere <- inAnnex key
+	if (ishere)
+		then return $ Just $ moveFromCleanup remote key
+		else do
+			Core.showNote $ "moving from " ++ (Git.repoDescribe remote) ++ "..."
+			ok <- getViaTmp key (Remotes.copyFromRemote remote key)
+			if (ok)
+				then return $ Just $ moveFromCleanup remote key
+				else return Nothing -- fail
+moveFromCleanup :: Git.Repo -> Key -> SubCmdCleanup
+moveFromCleanup remote key = do
+	ok <- Remotes.runCmd remote "git-annex" ["dropkey", "--quiet", "--force",
+		"--backend=" ++ (backendName key),
+		keyName key]
+	when ok $ do
+		-- Record locally that the key is not on the remote.
+		remoteuuid <- getUUID remote
+		g <- Annex.gitRepo
+		logfile <- liftIO $ logChange g key remoteuuid ValueMissing
+		Annex.queue "add" [] logfile
+	return ok
diff --git a/Command/SetKey.hs b/Command/SetKey.hs
new file mode 100644
index 000000000..a5710643e
--- /dev/null
+++ b/Command/SetKey.hs
@@ -0,0 +1,43 @@
+{- git-annex command
+ -
+ - Copyright 2010 Joey Hess <joey@kitenet.net>
+ -
+ - Licensed under the GNU GPL version 3 or higher.
+ -}
+
+module Command.SetKey where
+
+import Control.Monad.State (liftIO)
+import Control.Monad (when)
+
+import Command
+import qualified Annex
+import Utility
+import Locations
+import qualified Backend
+import LocationLog
+import Types
+import Core
+
+{- Sets cached content for a key. -}
+start :: SubCmdStartString
+start tmpfile = do
+	keyname <- Annex.flagGet "key"
+	when (null keyname) $ error "please specify the key with --key"
+	backends <- Backend.list
+	let key = genKey (backends !! 0) keyname
+	showStart "setkey" tmpfile
+	return $ Just $ perform tmpfile key
+perform :: FilePath -> Key -> SubCmdPerform
+perform tmpfile key = do
+	g <- Annex.gitRepo
+	let loc = annexLocation g key
+	ok <- liftIO $ boolSystem "mv" [tmpfile, loc]
+	if (not ok)
+		then error "mv failed!"
+		else return $ Just $ cleanup key
+cleanup :: Key -> SubCmdCleanup
+cleanup key = do
+	logStatus key ValuePresent
+	return True
+
diff --git a/Command/Unannex.hs b/Command/Unannex.hs
new file mode 100644
index 000000000..5cffb2d89
--- /dev/null
+++ b/Command/Unannex.hs
@@ -0,0 +1,48 @@
+{- git-annex command
+ -
+ - Copyright 2010 Joey Hess <joey@kitenet.net>
+ -
+ - Licensed under the GNU GPL version 3 or higher.
+ -}
+
+module Command.Unannex where
+
+import Control.Monad.State (liftIO)
+import System.Directory
+
+import Command
+import qualified Annex
+import Utility
+import Locations
+import qualified Backend
+import LocationLog
+import Types
+import Core
+import qualified GitRepo as Git
+
+{- The unannex subcommand undoes an add. -}
+start :: SubCmdStartString
+start file = isAnnexed file $ \(key, backend) -> do
+	showStart "unannex" file
+	return $ Just $ perform file key backend
+
+perform :: FilePath -> Key -> Backend -> SubCmdPerform
+perform file key backend = do
+	-- force backend to always remove
+	Annex.flagChange "force" $ FlagBool True
+	ok <- Backend.removeKey backend key
+	if (ok)
+		then return $ Just $ cleanup file key
+		else return Nothing
+
+cleanup :: FilePath -> Key -> SubCmdCleanup
+cleanup file key = do
+	logStatus key ValueMissing
+	g <- Annex.gitRepo
+	let src = annexLocation g key
+	liftIO $ removeFile file
+	liftIO $ Git.run g ["rm", "--quiet", file]
+	-- git rm deletes empty directories; put them back
+	liftIO $ createDirectoryIfMissing True (parentDir file)
+	liftIO $ renameFile src file
+	return True
diff --git a/Commands.hs b/Commands.hs
deleted file mode 100644
index 330b71ed2..000000000
--- a/Commands.hs
+++ /dev/null
@@ -1,555 +0,0 @@
-{- git-annex command line
- -
- - Copyright 2010 Joey Hess <joey@kitenet.net>
- -
- - Licensed under the GNU GPL version 3 or higher.
- -}
-
-module Commands (parseCmd) where
-
-import System.Console.GetOpt
-import Control.Monad.State (liftIO)
-import System.Posix.Files
-import System.Directory
-import Data.String.Utils
-import Control.Monad (filterM)
-import Monad (when, unless)
-
-import qualified GitRepo as Git
-import qualified Annex
-import Utility
-import Locations
-import qualified Backend
-import UUID
-import LocationLog
-import Types
-import Core
-import qualified Remotes
-
-{- A subcommand runs in four stages.
- -
- - 0. The seek stage takes the parameters passed to the subcommand,
- -    looks through the repo to find the ones that are relevant
- -    to that subcommand (ie, new files to add), and generates
- -    a list of start stage actions. -}
-type SubCmdSeek = [String] -> Annex [SubCmdStart]
-{- 1. The start stage is run before anything is printed about the
-  -   subcommand, is passed some input, and can early abort it
-  -   if the input does not make sense. It should run quickly and
-  -   should not modify Annex state. -}
-type SubCmdStart = Annex (Maybe SubCmdPerform)
-{- 2. The perform stage is run after a message is printed about the subcommand
- -    being run, and it should be where the bulk of the work happens. -}
-type SubCmdPerform = Annex (Maybe SubCmdCleanup)
-{- 3. The cleanup stage is run only if the perform stage succeeds, and it
- -    returns the overall success/fail of the subcommand. -}
-type SubCmdCleanup = Annex Bool
-{- Some helper functions are used to build up SubCmdSeek and SubCmdStart
- - functions. -}
-type SubCmdSeekStrings = SubCmdStartString -> SubCmdSeek
-type SubCmdStartString = String -> SubCmdStart
-type SubCmdSeekBackendFiles = SubCmdStartBackendFile -> SubCmdSeek
-type SubCmdStartBackendFile = (FilePath, Maybe Backend) -> SubCmdStart
-
-data SubCommand = SubCommand {
-	subcmdname :: String,
-	subcmdparams :: String,
-	subcmdseek :: SubCmdSeek,
-	subcmddesc :: String
-}
-subCmds :: [SubCommand]
-subCmds =  [
-	  (SubCommand "add" path	(withFilesNotInGit addStart)
-		"add files to annex")
-	, (SubCommand "get" path	(withFilesInGit getStart)
-		"make content of annexed files available")
-	, (SubCommand "drop" path	(withFilesInGit dropStart)
-		"indicate content of files not currently wanted")
-	, (SubCommand "move" path	(withFilesInGit moveStart)
-		"transfer content of files to/from another repository")
-	, (SubCommand "init" desc	(withDescription initStart)
-		"initialize git-annex with repository description")
-	, (SubCommand "unannex" path	(withFilesInGit unannexStart)
-		"undo accidential add command")
-	, (SubCommand "fix" path	(withFilesInGit fixStart)
-		"fix up symlinks to point to annexed content")
-	, (SubCommand "pre-commit" path (withFilesToBeCommitted fixStart)
-		"fix up symlinks before they are committed")
-	, (SubCommand "fromkey" key	(withFilesMissing fromKeyStart)
-		"adds a file using a specific key")
-	, (SubCommand "dropkey"	key	(withKeys dropKeyStart)
-		"drops annexed content for specified keys")
-	, (SubCommand "setkey" key	(withTempFile setKeyStart)
-		"sets annexed content for a key using a temp file")
-	]
-	where
-		path = "PATH ..."
-		key = "KEY ..."
-		desc = "DESCRIPTION"
-
--- Each dashed command-line option results in generation of an action
--- in the Annex monad that performs the necessary setting.
-options :: [OptDescr (Annex ())]
-options = [
-	    Option ['f'] ["force"] (NoArg (storebool "force" True))
-		"allow actions that may lose annexed data"
-	  , Option ['q'] ["quiet"] (NoArg (storebool "quiet" True))
-		"avoid verbose output"
-	  , Option ['v'] ["verbose"] (NoArg (storebool "quiet" False))
-		"allow verbose output"
-	  , Option ['b'] ["backend"] (ReqArg (storestring "backend") "NAME")
-		"specify default key-value backend to use"
-	  , Option ['k'] ["key"] (ReqArg (storestring "key") "KEY")
-		"specify a key to use"
-	  , Option ['t'] ["to"] (ReqArg (storestring "torepository") "REPOSITORY")
-		"specify to where to transfer content"
-	  , Option ['f'] ["from"] (ReqArg (storestring "fromrepository") "REPOSITORY")
-		"specify from where to transfer content"
-	  ]
-	where
-		storebool n b = Annex.flagChange n $ FlagBool b
-		storestring n s = Annex.flagChange n $ FlagString s
-
-header :: String
-header = "Usage: git-annex " ++ (join "|" $ map subcmdname subCmds)
-
-{- Usage message with lists of options and subcommands. -}
-usage :: String
-usage = usageInfo header options ++ "\nSubcommands:\n" ++ cmddescs
-	where
-		cmddescs = unlines $ map (\c -> indent $ showcmd c) subCmds
-		showcmd c =
-			(subcmdname c) ++
-			(pad 11 (subcmdname c)) ++
-			(subcmdparams c) ++
-			(pad 13 (subcmdparams c)) ++
-			(subcmddesc c)
-		indent l = "  " ++ l
-		pad n s = take (n - (length s)) $ repeat ' '
-
-{- Prepares a list of actions to run to perform a subcommand, based on
- - the parameters passed to it. -}
-prepSubCmd :: SubCommand -> AnnexState -> [String] -> IO [Annex Bool]
-prepSubCmd SubCommand { subcmdseek = seek } state params = do
-	list <- Annex.eval state $ seek params
-	return $ map (\a -> doSubCmd a) list
-
-{- Runs a subcommand through the start, perform and cleanup stages -}
-doSubCmd :: SubCmdStart -> SubCmdCleanup
-doSubCmd start = do
-	s <- start
-	case (s) of
-		Nothing -> return True
-		Just perform -> do
-			p <- perform
-			case (p) of
-				Nothing -> do
-					showEndFail
-					return False
-				Just cleanup -> do
-					c <- cleanup
-					if (c)
-						then do
-							showEndOk
-							return True
-						else do
-							showEndFail
-							return False
-
-{- These functions find appropriate files or other things based on a
-   user's parameters. -}
-withFilesNotInGit :: SubCmdSeekBackendFiles
-withFilesNotInGit a params = do
-	repo <- Annex.gitRepo
-	files <- liftIO $ mapM (Git.notInRepo repo) params
-	let files' = foldl (++) [] files
-	pairs <- Backend.chooseBackends files'
-	return $ map a $ filter (\(f,_) -> notState f) pairs
-withFilesInGit :: SubCmdSeekStrings
-withFilesInGit a params = do
-	repo <- Annex.gitRepo
-	files <- liftIO $ mapM (Git.inRepo repo) params
-	return $ map a $ filter notState $ foldl (++) [] files
-withFilesMissing :: SubCmdSeekStrings
-withFilesMissing a params = do
-	files <- liftIO $ filterM missing params
-	return $ map a $ filter notState files
-	where
-		missing f = do
-			e <- doesFileExist f
-			return $ not e
-withDescription :: SubCmdSeekStrings
-withDescription a params = do
-	return $ [a $ unwords params]
-withFilesToBeCommitted :: SubCmdSeekStrings
-withFilesToBeCommitted a params = do
-	repo <- Annex.gitRepo
-	files <- liftIO $ mapM (Git.stagedFiles repo) params
-	return $ map a $ filter notState $ foldl (++) [] files
-withKeys :: SubCmdSeekStrings
-withKeys a params = return $ map a params
-withTempFile :: SubCmdSeekStrings
-withTempFile a params = return $ map a params
-
-{- filter out files from the state directory -}
-notState :: FilePath -> Bool
-notState f = stateLoc /= take (length stateLoc) f
-
-{- Parses command line and returns two lists of actions to be 
- - run in the Annex monad. The first actions configure it
- - according to command line options, while the second actions
- - handle subcommands. -}
-parseCmd :: [String] -> AnnexState -> IO ([Annex Bool], [Annex Bool])
-parseCmd argv state = do
-	(flags, params) <- getopt
-	when (null params) $ error usage
-	case lookupCmd (params !! 0) of
-		[] -> error usage
-		[subcommand] -> do
-			actions <- prepSubCmd subcommand state (drop 1 params)
-			let configactions = map (\flag -> do
-				flag
-				return True) flags
-			return (configactions, actions)
-		_ -> error "internal error: multiple matching subcommands"
-	where
-		getopt = case getOpt Permute options argv of
-			(flags, params, []) -> return (flags, params)
-			(_, _, errs) -> ioError (userError (concat errs ++ usage))
-		lookupCmd cmd = filter (\c -> cmd  == subcmdname c) subCmds
-
-{- The add subcommand annexes a file, storing it in a backend, and then
- - moving it into the annex directory and setting up the symlink pointing
- - to its content. -}
-addStart :: SubCmdStartBackendFile
-addStart pair@(file, _) = notAnnexed file $ do
-	s <- liftIO $ getSymbolicLinkStatus file
-	if ((isSymbolicLink s) || (not $ isRegularFile s))
-		then return Nothing
-		else do
-			showStart "add" file
-			return $ Just $ addPerform pair
-addPerform :: (FilePath, Maybe Backend) -> SubCmdPerform
-addPerform (file, backend) = do
-	stored <- Backend.storeFileKey file backend
-	case (stored) of
-		Nothing -> return Nothing
-		Just (key, _) -> return $ Just $ addCleanup file key
-addCleanup :: FilePath -> Key -> SubCmdCleanup
-addCleanup file key = do
-	logStatus key ValuePresent
-	g <- Annex.gitRepo
-	let dest = annexLocation g key
-	liftIO $ createDirectoryIfMissing True (parentDir dest)
-	liftIO $ renameFile file dest
-	link <- calcGitLink file key
-	liftIO $ createSymbolicLink link file
-	Annex.queue "add" [] file
-	return True
-
-{- The unannex subcommand undoes an add. -}
-unannexStart :: SubCmdStartString
-unannexStart file = isAnnexed file $ \(key, backend) -> do
-	showStart "unannex" file
-	return $ Just $ unannexPerform file key backend
-unannexPerform :: FilePath -> Key -> Backend -> SubCmdPerform
-unannexPerform file key backend = do
-	-- force backend to always remove
-	Annex.flagChange "force" $ FlagBool True
-	ok <- Backend.removeKey backend key
-	if (ok)
-		then return $ Just $ unannexCleanup file key
-		else return Nothing
-unannexCleanup :: FilePath -> Key -> SubCmdCleanup
-unannexCleanup file key = do
-	logStatus key ValueMissing
-	g <- Annex.gitRepo
-	let src = annexLocation g key
-	liftIO $ removeFile file
-	liftIO $ Git.run g ["rm", "--quiet", file]
-	-- git rm deletes empty directories; put them back
-	liftIO $ createDirectoryIfMissing True (parentDir file)
-	liftIO $ renameFile src file
-	return True
-
-{- Gets an annexed file from one of the backends. -}
-getStart :: SubCmdStartString
-getStart file = isAnnexed file $ \(key, backend) -> do
-	inannex <- inAnnex key
-	if (inannex)
-		then return Nothing
-		else do
-			showStart "get" file
-			return $ Just $ getPerform key backend
-getPerform :: Key -> Backend -> SubCmdPerform
-getPerform key backend = do
-	ok <- getViaTmp key (Backend.retrieveKeyFile backend key)
-	if (ok)
-		then return $ Just $ return True -- no cleanup needed
-		else return Nothing
-
-{- Indicates a file's content is not wanted anymore, and should be removed
- - if it's safe to do so. -}
-dropStart :: SubCmdStartString
-dropStart file = isAnnexed file $ \(key, backend) -> do
-	inbackend <- Backend.hasKey key
-	if (not inbackend)
-		then return Nothing
-		else do
-			showStart "drop" file
-			return $ Just $ dropPerform key backend
-dropPerform :: Key -> Backend -> SubCmdPerform
-dropPerform key backend = do
-	success <- Backend.removeKey backend key
-	if (success)
-		then return $ Just $ dropCleanup key
-		else return Nothing
-dropCleanup :: Key -> SubCmdCleanup
-dropCleanup key = do
-	logStatus key ValueMissing
-	inannex <- inAnnex key
-	if (inannex)
-		then do
-			g <- Annex.gitRepo
-			let loc = annexLocation g key
-			liftIO $ removeFile loc
-			return True
-		else return True
-
-{- Drops cached content for a key. -}
-dropKeyStart :: SubCmdStartString
-dropKeyStart keyname = do
-	backends <- Backend.list
-	let key = genKey (backends !! 0) keyname
-	present <- inAnnex key
-	force <- Annex.flagIsSet "force"
-	if (not present)
-		then return Nothing
-		else if (not force)
-			then error "dropkey is can cause data loss; use --force if you're sure you want to do this"
-			else do
-				showStart "dropkey" keyname
-				return $ Just $ dropKeyPerform key
-dropKeyPerform :: Key -> SubCmdPerform
-dropKeyPerform key = do
-	g <- Annex.gitRepo
-	let loc = annexLocation g key
-	liftIO $ removeFile loc
-	return $ Just $ dropKeyCleanup key
-dropKeyCleanup :: Key -> SubCmdCleanup
-dropKeyCleanup key = do
-	logStatus key ValueMissing
-	return True
-
-{- Sets cached content for a key. -}
-setKeyStart :: SubCmdStartString
-setKeyStart tmpfile = do
-	keyname <- Annex.flagGet "key"
-	when (null keyname) $ error "please specify the key with --key"
-	backends <- Backend.list
-	let key = genKey (backends !! 0) keyname
-	showStart "setkey" tmpfile
-	return $ Just $ setKeyPerform tmpfile key
-setKeyPerform :: FilePath -> Key -> SubCmdPerform
-setKeyPerform tmpfile key = do
-	g <- Annex.gitRepo
-	let loc = annexLocation g key
-	ok <- liftIO $ boolSystem "mv" [tmpfile, loc]
-	if (not ok)
-		then error "mv failed!"
-		else return $ Just $ setKeyCleanup key
-setKeyCleanup :: Key -> SubCmdCleanup
-setKeyCleanup key = do
-	logStatus key ValuePresent
-	return True
-
-{- Fixes the symlink to an annexed file. -}
-fixStart :: SubCmdStartString
-fixStart file = isAnnexed file $ \(key, _) -> do
-	link <- calcGitLink file key
-	l <- liftIO $ readSymbolicLink file
-	if (link == l)
-		then return Nothing
-		else do
-			showStart "fix" file
-			return $ Just $ fixPerform file link
-fixPerform :: FilePath -> FilePath -> SubCmdPerform
-fixPerform file link = do
-	liftIO $ createDirectoryIfMissing True (parentDir file)
-	liftIO $ removeFile file
-	liftIO $ createSymbolicLink link file
-	return $ Just $ fixCleanup file
-fixCleanup :: FilePath -> SubCmdCleanup
-fixCleanup file = do
-	Annex.queue "add" [] file
-	return True
-
-{- Stores description for the repository etc. -}
-initStart :: SubCmdStartString
-initStart description = do
-	when (null description) $ error $
-		"please specify a description of this repository\n" ++ usage
-	showStart "init" description
-	return $ Just $ initPerform description
-initPerform :: String -> SubCmdPerform
-initPerform description = do
-	g <- Annex.gitRepo
-	u <- getUUID g
-	describeUUID u description
-	liftIO $ gitAttributes g
-	liftIO $ gitPreCommitHook g
-	return $ Just $ initCleanup
-initCleanup :: SubCmdCleanup
-initCleanup = do
-	g <- Annex.gitRepo
-	logfile <- uuidLog
-	liftIO $ Git.run g ["add", logfile]
-	liftIO $ Git.run g ["commit", "-m", "git annex init", logfile]
-	return True
-
-{- Adds a file pointing at a manually-specified key -}
-fromKeyStart :: SubCmdStartString
-fromKeyStart file = do
-	keyname <- Annex.flagGet "key"
-	when (null keyname) $ error "please specify the key with --key"
-	backends <- Backend.list
-	let key = genKey (backends !! 0) keyname
-
-	inbackend <- Backend.hasKey key
-	unless (inbackend) $ error $
-		"key ("++keyname++") is not present in backend"
-	showStart "fromkey" file
-	return $ Just $ fromKeyPerform file key
-fromKeyPerform :: FilePath -> Key -> SubCmdPerform
-fromKeyPerform file key = do
-	link <- calcGitLink file key
-	liftIO $ createDirectoryIfMissing True (parentDir file)
-	liftIO $ createSymbolicLink link file
-	return $ Just $ fromKeyCleanup file
-fromKeyCleanup :: FilePath -> SubCmdCleanup
-fromKeyCleanup file = do
-	Annex.queue "add" [] file
-	return True
-
-{- Move a file either --to or --from a repository.
- -
- - This only operates on the cached file content; it does not involve
- - moving data in the key-value backend. -}
-moveStart :: SubCmdStartString
-moveStart file = do
-	fromName <- Annex.flagGet "fromrepository"
-	toName <- Annex.flagGet "torepository"
-	case (fromName, toName) of
-		("", "") -> error "specify either --from or --to"
-		("",  _) -> moveToStart file
-		(_ , "") -> moveFromStart file
-		(_ ,  _) -> error "only one of --from or --to can be specified"
-
-{- Moves the content of an annexed file to another repository,
- - removing it from the current repository, and updates locationlog
- - information on both.
- -
- - If the destination already has the content, it is still removed
- - from the current repository.
- -
- - Note that unlike drop, this does not honor annex.numcopies.
- - A file's content can be moved even if there are insufficient copies to
- - allow it to be dropped.
- -}
-moveToStart :: SubCmdStartString
-moveToStart file = isAnnexed file $ \(key, _) -> do
-	ishere <- inAnnex key
-	if (not ishere)
-		then return Nothing -- not here, so nothing to do
-		else do
-			showStart "move" file
-			return $ Just $ moveToPerform key
-moveToPerform :: Key -> SubCmdPerform
-moveToPerform key = do
-	-- checking the remote is expensive, so not done in the start step
-	remote <- Remotes.commandLineRemote
-	isthere <- Remotes.inAnnex remote key
-	case isthere of
-		Left err -> do
-			showNote $ show err
-			return Nothing
-		Right False -> do
-			Core.showNote $ "moving to " ++ (Git.repoDescribe remote) ++ "..."
-			let tmpfile = (annexTmpLocation remote) ++ (keyFile key)
-			ok <- Remotes.copyToRemote remote key tmpfile
-			if (ok)
-				then return $ Just $ moveToCleanup remote key tmpfile
-				else return Nothing -- failed
-		Right True -> return $ Just $ dropCleanup key
-moveToCleanup :: Git.Repo -> Key -> FilePath -> SubCmdCleanup
-moveToCleanup remote key tmpfile = do
-	-- Tell remote to use the transferred content.
-	ok <- Remotes.runCmd remote "git-annex" ["setkey", "--quiet",
-		"--backend=" ++ (backendName key),
-		"--key=" ++ keyName key,
-		tmpfile]
-	if ok
-		then do
-			-- Record that the key is present on the remote.
-			g <- Annex.gitRepo
-			remoteuuid <- getUUID remote
-			logfile <- liftIO $ logChange g key remoteuuid ValuePresent
-			Annex.queue "add" [] logfile
-			-- Cleanup on the local side is the same as done for the
-			-- drop subcommand.
-			dropCleanup key
-		else return False
-
-{- Moves the content of an annexed file from another repository to the current
- - repository and updates locationlog information on both.
- -
- - If the current repository already has the content, it is still removed
- - from the other repository.
- -}
-moveFromStart :: SubCmdStartString
-moveFromStart file = isAnnexed file $ \(key, _) -> do
-	remote <- Remotes.commandLineRemote
-	l <- Remotes.keyPossibilities key
-	if (null $ filter (\r -> Remotes.same r remote) l)
-		then return Nothing
-		else do
-			showStart "move" file
-			return $ Just $ moveFromPerform key
-moveFromPerform :: Key -> SubCmdPerform
-moveFromPerform key = do
-	remote <- Remotes.commandLineRemote
-	ishere <- inAnnex key
-	if (ishere)
-		then return $ Just $ moveFromCleanup remote key
-		else do
-			Core.showNote $ "moving from " ++ (Git.repoDescribe remote) ++ "..."
-			ok <- getViaTmp key (Remotes.copyFromRemote remote key)
-			if (ok)
-				then return $ Just $ moveFromCleanup remote key
-				else return Nothing -- fail
-moveFromCleanup :: Git.Repo -> Key -> SubCmdCleanup
-moveFromCleanup remote key = do
-	ok <- Remotes.runCmd remote "git-annex" ["dropkey", "--quiet", "--force",
-		"--backend=" ++ (backendName key),
-		keyName key]
-	when ok $ do
-		-- Record locally that the key is not on the remote.
-		remoteuuid <- getUUID remote
-		g <- Annex.gitRepo
-		logfile <- liftIO $ logChange g key remoteuuid ValueMissing
-		Annex.queue "add" [] logfile
-	return ok
-
--- helpers
-notAnnexed :: FilePath -> Annex (Maybe a) -> Annex (Maybe a)
-notAnnexed file a = do
-	r <- Backend.lookupFile file
-	case (r) of
-		Just _ -> return Nothing
-		Nothing -> a
-isAnnexed :: FilePath -> ((Key, Backend) -> Annex (Maybe a)) -> Annex (Maybe a)
-isAnnexed file a = do
-	r <- Backend.lookupFile file
-	case (r) of
-		Just v -> a v
-		Nothing -> return Nothing
diff --git a/git-annex.hs b/git-annex.hs
index 370c22a1e..098ccac2d 100644
--- a/git-annex.hs
+++ b/git-annex.hs
@@ -9,7 +9,7 @@ import System.Environment
 
 import qualified Annex
 import Core
-import Commands
+import CmdLine
 import qualified GitRepo as Git
 import BackendList