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authorGravatar Igor Babuschkin <igor@babuschk.in>2016-06-02 13:35:47 +0100
committerGravatar Igor Babuschkin <igor@babuschk.in>2016-06-02 13:35:47 +0100
commitfbd7ed6ff73eca76aa6e0691228d26098ad9c19e (patch)
tree4f860fb483ceb58cf6cbc7f4d834f923ca50d358 /unsupported
parent0ed08fd28180e41838fbe40f8e96c888220895ed (diff)
Add tensor scan op
This is the initial implementation a generic scan operation. Based on this, cumsum and cumprod method have been added to TensorBase.
Diffstat (limited to 'unsupported')
-rw-r--r--unsupported/Eigen/CXX11/Tensor1
-rw-r--r--unsupported/Eigen/CXX11/src/Tensor/README.md38
-rw-r--r--unsupported/Eigen/CXX11/src/Tensor/TensorBase.h15
-rw-r--r--unsupported/Eigen/CXX11/src/Tensor/TensorForwardDeclarations.h1
-rw-r--r--unsupported/Eigen/CXX11/src/Tensor/TensorScan.h197
-rw-r--r--unsupported/test/CMakeLists.txt1
-rw-r--r--unsupported/test/cxx11_tensor_scan.cpp98
7 files changed, 351 insertions, 0 deletions
diff --git a/unsupported/Eigen/CXX11/Tensor b/unsupported/Eigen/CXX11/Tensor
index 77431cfc9..859147404 100644
--- a/unsupported/Eigen/CXX11/Tensor
+++ b/unsupported/Eigen/CXX11/Tensor
@@ -114,6 +114,7 @@ typedef unsigned __int64 uint64_t;
#include "src/Tensor/TensorForcedEval.h"
#include "src/Tensor/TensorGenerator.h"
#include "src/Tensor/TensorAssign.h"
+#include "src/Tensor/TensorScan.h"
#include "src/Tensor/TensorExecutor.h"
#include "src/Tensor/TensorDevice.h"
diff --git a/unsupported/Eigen/CXX11/src/Tensor/README.md b/unsupported/Eigen/CXX11/src/Tensor/README.md
index eeca2f69e..fda33edda 100644
--- a/unsupported/Eigen/CXX11/src/Tensor/README.md
+++ b/unsupported/Eigen/CXX11/src/Tensor/README.md
@@ -1168,6 +1168,44 @@ Reduce a tensor using a user-defined reduction operator. See ```SumReducer```
in TensorFunctors.h for information on how to implement a reduction operator.
+## Scan Operations
+
+A *Scan* operation returns a tensor with the same dimensions as the original
+tensor. The operation performs an inclusive scan along the specified
+axis, which means it computes a running total along the axis for a given
+reduction operation.
+If the reduction operation corresponds to summation, then this computes the
+prefix sum of the tensor along the given axis.
+
+Example:
+dd a comment to this line
+
+ // Create a tensor of 2 dimensions
+ Eigen::Tensor<int, 2> a(2, 3);
+ a.setValues({{1, 2, 3}, {4, 5, 6}});
+ // Scan it along the second dimension (1) using summation
+ Eigen::Tensor<int, 2> b = a.cumsum(1);
+ // The result is a tensor with the same size as the input
+ cout << "a" << endl << a << endl << endl;
+ cout << "b" << endl << b << endl << endl;
+ =>
+ a
+ 1 2 3
+ 6 5 4
+
+ b
+ 1 3 6
+ 4 9 15
+
+### <Operation> cumsum(const Index& axis)
+
+Perform a scan by summing consecutive entries.
+
+### <Operation> cumprod(const Index& axis)
+
+Perform a scan by multiplying consecutive entries.
+
+
## Convolutions
### <Operation> convolve(const Kernel& kernel, const Dimensions& dims)
diff --git a/unsupported/Eigen/CXX11/src/Tensor/TensorBase.h b/unsupported/Eigen/CXX11/src/Tensor/TensorBase.h
index 07dcfa556..1eaa8d4fc 100644
--- a/unsupported/Eigen/CXX11/src/Tensor/TensorBase.h
+++ b/unsupported/Eigen/CXX11/src/Tensor/TensorBase.h
@@ -453,6 +453,21 @@ class TensorBase<Derived, ReadOnlyAccessors>
return TensorFFTOp<const FFT, const Derived, FFTDataType, FFTDirection>(derived(), fft);
}
+ // Scan.
+ typedef TensorScanOp<internal::SumReducer<CoeffReturnType>, const Derived> TensorScanSumOp;
+ EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
+ const TensorScanSumOp
+ cumsum(const Index& axis) const {
+ return TensorScanSumOp(derived(), axis);
+ }
+
+ typedef TensorScanOp<internal::ProdReducer<CoeffReturnType>, const Derived> TensorScanProdOp;
+ EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
+ const TensorScanProdOp
+ cumprod(const Index& axis) const {
+ return TensorScanProdOp(derived(), axis);
+ }
+
// Reductions.
template <typename Dims> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
const TensorReductionOp<internal::SumReducer<CoeffReturnType>, const Dims, const Derived>
diff --git a/unsupported/Eigen/CXX11/src/Tensor/TensorForwardDeclarations.h b/unsupported/Eigen/CXX11/src/Tensor/TensorForwardDeclarations.h
index 5e59c7dee..a1a18d938 100644
--- a/unsupported/Eigen/CXX11/src/Tensor/TensorForwardDeclarations.h
+++ b/unsupported/Eigen/CXX11/src/Tensor/TensorForwardDeclarations.h
@@ -46,6 +46,7 @@ template<typename StartIndices, typename StopIndices, typename Strides, typename
template<typename Strides, typename XprType> class TensorInflationOp;
template<typename Generator, typename XprType> class TensorGeneratorOp;
template<typename LeftXprType, typename RightXprType> class TensorAssignOp;
+template<typename Op, typename XprType> class TensorScanOp;
template<typename CustomUnaryFunc, typename XprType> class TensorCustomUnaryOp;
template<typename CustomBinaryFunc, typename LhsXprType, typename RhsXprType> class TensorCustomBinaryOp;
diff --git a/unsupported/Eigen/CXX11/src/Tensor/TensorScan.h b/unsupported/Eigen/CXX11/src/Tensor/TensorScan.h
new file mode 100644
index 000000000..031dbf6f2
--- /dev/null
+++ b/unsupported/Eigen/CXX11/src/Tensor/TensorScan.h
@@ -0,0 +1,197 @@
+// This file is part of Eigen, a lightweight C++ template library
+// for linear algebra.
+//
+// Copyright (C) 2016 Igor Babuschkin <igor@babuschk.in>
+//
+// This Source Code Form is subject to the terms of the Mozilla
+// Public License v. 2.0. If a copy of the MPL was not distributed
+// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
+
+#ifndef EIGEN_CXX11_TENSOR_TENSOR_SCAN_H
+#define EIGEN_CXX11_TENSOR_TENSOR_SCAN_H
+namespace Eigen {
+
+namespace internal {
+template <typename Op, typename XprType>
+struct traits<TensorScanOp<Op, XprType> >
+ : public traits<XprType> {
+ typedef typename XprType::Scalar Scalar;
+ typedef traits<XprType> XprTraits;
+ typedef typename XprTraits::StorageKind StorageKind;
+ typedef typename XprType::Nested Nested;
+ typedef typename remove_reference<Nested>::type _Nested;
+ static const int NumDimensions = XprTraits::NumDimensions;
+ static const int Layout = XprTraits::Layout;
+};
+
+template<typename Op, typename XprType>
+struct eval<TensorScanOp<Op, XprType>, Eigen::Dense>
+{
+ typedef const TensorScanOp<Op, XprType>& type;
+};
+
+template<typename Op, typename XprType>
+struct nested<TensorScanOp<Op, XprType>, 1,
+ typename eval<TensorScanOp<Op, XprType> >::type>
+{
+ typedef TensorScanOp<Op, XprType> type;
+};
+} // end namespace internal
+
+/** \class TensorScan
+ * \ingroup CXX11_Tensor_Module
+ *
+ * \brief Tensor scan class.
+ *
+ */
+
+template <typename Op, typename XprType>
+class TensorScanOp
+ : public TensorBase<TensorScanOp<Op, XprType>, ReadOnlyAccessors> {
+public:
+ typedef typename Eigen::internal::traits<TensorScanOp>::Scalar Scalar;
+ typedef typename Eigen::NumTraits<Scalar>::Real RealScalar;
+ typedef typename XprType::CoeffReturnType CoeffReturnType;
+ typedef typename Eigen::internal::nested<TensorScanOp>::type Nested;
+ typedef typename Eigen::internal::traits<TensorScanOp>::StorageKind StorageKind;
+ typedef typename Eigen::internal::traits<TensorScanOp>::Index Index;
+
+ EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorScanOp(
+ const XprType& expr, const Index& axis, const Op& op = Op())
+ : m_expr(expr), m_axis(axis), m_accumulator(op) {}
+
+ EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
+ const Index axis() const { return m_axis; }
+ EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
+ const XprType& expression() const { return m_expr; }
+ EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
+ const Op accumulator() const { return m_accumulator; }
+
+protected:
+ typename XprType::Nested m_expr;
+ const Index m_axis;
+ const Op m_accumulator;
+};
+
+// Eval as rvalue
+template <typename Op, typename ArgType, typename Device>
+struct TensorEvaluator<const TensorScanOp<Op, ArgType>, Device> {
+
+ typedef TensorScanOp<Op, ArgType> XprType;
+ typedef typename XprType::Index Index;
+ static const int NumDims = internal::array_size<typename TensorEvaluator<ArgType, Device>::Dimensions>::value;
+ typedef DSizes<Index, NumDims> Dimensions;
+ typedef typename XprType::Scalar Scalar;
+ typedef typename XprType::CoeffReturnType CoeffReturnType;
+ typedef typename PacketType<CoeffReturnType, Device>::type PacketReturnType;
+
+ enum {
+ IsAligned = false,
+ PacketAccess = (internal::packet_traits<Scalar>::size > 1),
+ BlockAccess = false,
+ Layout = TensorEvaluator<ArgType, Device>::Layout,
+ CoordAccess = false,
+ RawAccess = true
+ };
+
+ EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorEvaluator(const XprType& op,
+ const Device& device)
+ : m_impl(op.expression(), device),
+ m_device(device),
+ m_axis(op.axis()),
+ m_accumulator(op.accumulator()),
+ m_dimensions(m_impl.dimensions()),
+ m_size(m_dimensions[m_axis]),
+ m_stride(1),
+ m_output(NULL) {
+
+ // Accumulating a scalar isn't supported.
+ EIGEN_STATIC_ASSERT(NumDims > 0, YOU_MADE_A_PROGRAMMING_MISTAKE);
+ eigen_assert(m_axis >= 0 && m_axis < NumDims);
+
+ // Compute stride of scan axis
+ if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
+ for (int i = 0; i < m_axis; ++i) {
+ m_stride = m_stride * m_dimensions[i];
+ }
+ } else {
+ for (int i = NumDims - 1; i > m_axis; --i) {
+ m_stride = m_stride * m_dimensions[i];
+ }
+ }
+ }
+
+ EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Dimensions& dimensions() const {
+ return m_dimensions;
+ }
+
+ EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE bool evalSubExprsIfNeeded(Scalar* data) {
+ m_impl.evalSubExprsIfNeeded(NULL);
+ if (data) {
+ accumulateTo(data);
+ return false;
+ } else {
+ m_output = static_cast<CoeffReturnType*>(m_device.allocate(dimensions().TotalSize() * sizeof(Scalar)));
+ accumulateTo(m_output);
+ return true;
+ }
+ }
+
+ template<int LoadMode>
+ EIGEN_DEVICE_FUNC PacketReturnType packet(Index index) const {
+ return internal::ploadt<PacketReturnType, LoadMode>(m_output + index);
+ }
+
+ EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE CoeffReturnType* data() const
+ {
+ return m_output;
+ }
+
+ EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE CoeffReturnType coeff(Index index) const
+ {
+ return m_output[index];
+ }
+
+ EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void cleanup() {
+ if (m_output != NULL) {
+ m_device.deallocate(m_output);
+ m_output = NULL;
+ }
+ m_impl.cleanup();
+ }
+
+protected:
+ TensorEvaluator<ArgType, Device> m_impl;
+ const Device& m_device;
+ const Index m_axis;
+ Op m_accumulator;
+ const Dimensions& m_dimensions;
+ const Index& m_size;
+ Index m_stride;
+ CoeffReturnType* m_output;
+
+ // TODO(ibab) Parallelize this single-threaded implementation if desired
+ EIGEN_DEVICE_FUNC void accumulateTo(Scalar* data) {
+ // We fix the index along the scan axis to 0 and perform an
+ // scan per remaining entry. The iteration is split into two nested
+ // loops to avoid an integer division by keeping track of each idx1 and idx2.
+ for (Index idx1 = 0; idx1 < dimensions().TotalSize() / m_size; idx1 += m_stride) {
+ for (Index idx2 = 0; idx2 < m_stride; idx2++) {
+ // Calculate the starting offset for the scan
+ Index offset = idx1 * m_size + idx2;
+
+ // Compute the prefix sum along the axis, starting at the calculated offset
+ CoeffReturnType accum = m_accumulator.initialize();
+ for (Index idx3 = 0; idx3 < m_size; idx3++) {
+ Index curr = offset + idx3 * m_stride;
+ m_accumulator.reduce(m_impl.coeff(curr), &accum);
+ data[curr] = m_accumulator.finalize(accum);
+ }
+ }
+ }
+ }
+};
+
+} // end namespace Eigen
+
+#endif // EIGEN_CXX11_TENSOR_TENSOR_SCAN_H
diff --git a/unsupported/test/CMakeLists.txt b/unsupported/test/CMakeLists.txt
index 70a3e4565..2d65eb0cd 100644
--- a/unsupported/test/CMakeLists.txt
+++ b/unsupported/test/CMakeLists.txt
@@ -176,6 +176,7 @@ if(EIGEN_TEST_CXX11)
ei_add_test(cxx11_tensor_custom_index)
ei_add_test(cxx11_tensor_fft)
ei_add_test(cxx11_tensor_ifft)
+ ei_add_test(cxx11_tensor_scan)
endif()
diff --git a/unsupported/test/cxx11_tensor_scan.cpp b/unsupported/test/cxx11_tensor_scan.cpp
new file mode 100644
index 000000000..dbd3023d7
--- /dev/null
+++ b/unsupported/test/cxx11_tensor_scan.cpp
@@ -0,0 +1,98 @@
+// This file is part of Eigen, a lightweight C++ template library
+// for linear algebra.
+//
+// Copyright (C) 2016 Igor Babuschkin <igor@babuschk.in>
+//
+// This Source Code Form is subject to the terms of the Mozilla
+// Public License v. 2.0. If a copy of the MPL was not distributed
+// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
+
+#include "main.h"
+#include <limits>
+#include <numeric>
+#include <Eigen/CXX11/Tensor>
+
+using Eigen::Tensor;
+
+template <int DataLayout, typename Type=float>
+static void test_1d_scan()
+{
+ int size = 50;
+ Tensor<Type, 1, DataLayout> tensor(size);
+ tensor.setRandom();
+ Tensor<Type, 1, DataLayout> result = tensor.cumsum(0);
+
+ VERIFY_IS_EQUAL(tensor.dimension(0), result.dimension(0));
+
+ float accum = 0;
+ for (int i = 0; i < size; i++) {
+ accum += tensor(i);
+ VERIFY_IS_EQUAL(result(i), accum);
+ }
+
+ accum = 1;
+ result = tensor.cumprod(0);
+ for (int i = 0; i < size; i++) {
+ accum *= tensor(i);
+ VERIFY_IS_EQUAL(result(i), accum);
+ }
+}
+
+template <int DataLayout, typename Type=float>
+static void test_4d_scan()
+{
+ int size = 5;
+ Tensor<Type, 4, DataLayout> tensor(size, size, size, size);
+ tensor.setRandom();
+
+ Tensor<Type, 4, DataLayout> result(size, size, size, size);
+
+ result = tensor.cumsum(0);
+ float accum = 0;
+ for (int i = 0; i < size; i++) {
+ accum += tensor(i, 0, 0, 0);
+ VERIFY_IS_EQUAL(result(i, 0, 0, 0), accum);
+ }
+ result = tensor.cumsum(1);
+ accum = 0;
+ for (int i = 0; i < size; i++) {
+ accum += tensor(0, i, 0, 0);
+ VERIFY_IS_EQUAL(result(0, i, 0, 0), accum);
+ }
+ result = tensor.cumsum(2);
+ accum = 0;
+ for (int i = 0; i < size; i++) {
+ accum += tensor(0, 0, i, 0);
+ VERIFY_IS_EQUAL(result(0, 0, i, 0), accum);
+ }
+ result = tensor.cumsum(3);
+ accum = 0;
+ for (int i = 0; i < size; i++) {
+ accum += tensor(0, 0, 0, i);
+ VERIFY_IS_EQUAL(result(0, 0, 0, i), accum);
+ }
+}
+
+template <int DataLayout>
+static void test_tensor_maps() {
+ int inputs[20];
+ TensorMap<Tensor<int, 1, DataLayout> > tensor_map(inputs, 20);
+ tensor_map.setRandom();
+
+ Tensor<int, 1, DataLayout> result = tensor_map.cumsum(0);
+
+ int accum = 0;
+ for (int i = 0; i < 20; ++i) {
+ accum += tensor_map(i);
+ VERIFY_IS_EQUAL(result(i), accum);
+ }
+}
+
+void test_cxx11_tensor_scan() {
+ CALL_SUBTEST(test_1d_scan<ColMajor>());
+ CALL_SUBTEST(test_1d_scan<RowMajor>());
+ CALL_SUBTEST(test_4d_scan<ColMajor>());
+ CALL_SUBTEST(test_4d_scan<RowMajor>());
+ CALL_SUBTEST(test_tensor_maps<ColMajor>());
+ CALL_SUBTEST(test_tensor_maps<RowMajor>());
+}