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Merge reference.conf files in single jar since [akka will break](https://doc.akka.io/docs/akka/current/general/configuration.html#when-using-jarjar-onejar-assembly-or-any-jar-bundler) if reference.conf files are overwritten.
The feature is added to both java and cpp implementations of singlejar to concatenate reference.conf files to keep behaviors consistent. For the cpp implementation, using `OutputJar.ExtraCombiner` in singlejar_main.cc feels less intrusive than adding a new `Concatenator` in the output_jar code.
Bazel-dev discussion on the issue is [here](https://groups.google.com/forum/#!topic/bazel-dev/C30dwAPL708).
Closes #4413.
PiperOrigin-RevId: 181622277
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Tony Liang
kmb
Sasha Smundak