[[!comment format=mdwn username="CandyAngel" ip="81.111.193.130" subject="comment 1" date="2014-07-17T15:43:03Z" content=""" Joey has pointed me to the solution. git-annex was remembering these files due to them being present in *.git/annex/index*. A simple `rm .git/annex/index` after moving the git-annex branch to the earlier commit prevents the \"ghost\" log files from being recreated and Joey confirmed this is safe to do (git-annex automatically recreates it). """]]