[[!comment format=mdwn username="joey" subject="""comment 2""" date="2017-06-09T17:25:23Z" content=""" I have not had any luck with reproducing the problem, using your script, on Debian unstable. The transfer repo gets the file contents and both it and the source repo knows where they are. Do you see the same behavior if, rather than running the assistant for 30 seconds, you run `git annex sync --content` ? Are you using git-annex in direct mode and/or on an unusual filesystem? """]]