[[!comment format=mdwn
 username="http://joeyh.name/"
 ip="4.154.4.90"
 subject="comment 1"
 date="2013-07-16T18:21:18Z"
 content="""
I can't reproduce that. uninit leaves alone files that are not checked into git. Indeed, it only ever does anything to files that are checked into git and are symlinks to git-annex content. So I don't see how it could possibly behave as described.

Please provide a complete transcript of the problem you are seeing.
"""]]