[[!comment format=sh username="https://www.google.com/accounts/o8/id?id=AItOawn0hu_TPhLcUM1Ivvn7iIoZ_iD3g_5WDcs" nickname="Greg" subject="comment 2" date="2014-10-06T19:20:26Z" content=""" ubuntu@hostname:~$ cd annex ubuntu@hostname:~/annex$ git init Initialized empty Git repository in /home/ubuntu/annex/.git/ ubuntu@hostname:~/annex$ git annex init init ok ubuntu@hostname:~/annex$ echo foo > test.txt ubuntu@hostname:~/annex$ git annex add . add test.txt (checksum...) ok (Recording state in git...) ubuntu@hostname:~/annex$ git commit -a -m first [master (root-commit) fe54856] first 1 file changed, 1 insertion(+) create mode 120000 test.txt ubuntu@hostname:~/annex$ git annex unlock test.txt unlock test.txt (copying...) ok ubuntu@hostname:~/annex$ echo foobar > test.txt ubuntu@hostname:~/annex$ echo foo > test2.txt ubuntu@hostname:~/annex$ git annex add . add test2.txt (checksum...) ok add test.txt (checksum...) ok (Recording state in git...) ubuntu@hostname:~/annex$ git commit -a -m second [master 1776b25] second 2 files changed, 2 insertions(+), 1 deletion(-) create mode 120000 test2.txt ubuntu@hostname:~/annex$ tree -d ./git/annex ./git/annex [error opening dir] 0 directories ubuntu@hostname:~/annex$ tree -d .git/annex .git/annex ├── journal ├── objects │   ├── 8Z │   │   └── 1J │   │   └── SHA256-s4--b5bb9d8014a0f9b1d61e21e796d78dccdf1352f23cd32812f4850b878ae4944c │   └── q2 │   └── Xj │   └── SHA256-s7--aec070645fe53ee3b3763059376134f058cc337247c978add178b6ccdfb0019f └── tmp 9 directories ubuntu@hostname:~/annex$ ls test2.txt test.txt ubuntu@hostname:~/annex$ I'm expecting 3 SHA's in .git/annex, but I only see two. """]]