[[!comment format=mdwn username="joey" subject="""comment 6""" date="2016-05-16T20:14:57Z" content=""" I hope this will be fixed on the git side, but I don't know when it will be. Probably comes down to someone developing a patch. Occurs to me that git-annex could use adjusted branches to deal with this. When initializing in a submodule, it could enter an adjusted branch with `git annex adjust --fix`. This way, symlinks would be re-written to point to the submodule's git repository. The .git dotfile would not need to be converted to a symlink at all. """]]