[[!comment format=mdwn username="joey" subject="""comment 1""" date="2017-04-05T15:44:47Z" content=""" I don't think this is a bug in git-annex. That is the behavior of `git-remote-gcrypt`. Could you please file a bug on that program instead? (I've also wondered about this; it could be that it's re-uploading the manifest every time for good security reasons, or it could be that a better file structure would allow more incremental uploads. It certianly seems like it could avoid re-uploading when nothing has changed!) """]]