[[!comment format=mdwn username="joey" subject="""comment 3""" date="2016-07-12T18:31:17Z" content=""" Not sure if that stack bug you linked to is quite a match for what it's doing, so I opened a new one: I don't currently see anything I could do in git-annex to avoid this problem. What version of stack are you using? It could be that a newer version of stack doesn't have the problem. """]]