[[!comment format=mdwn
 username="https://andrew.aylett.co.uk/"
 nickname="andrew"
 subject="comment 4"
 date="2014-09-07T18:41:28Z"
 content="""
I, too, have seen this issue -- took me a while to recover from it.  I do (now, at least) have a pre-commit hook that calls git annex pre-commit; I didn't set that up myself.
"""]]