[[!comment format=mdwn username="chris@f4ea67aa5ae4709d79959f782fcebb5edae9a79b" nickname="chris" subject="comment 2" date="2016-06-07T13:40:24Z" content=""" The way I got round this was to give the metadata-only repository an annex-uuid of 00000000-0000-0000-0000-000000000000, and to run \"git annex wanted remotename nothing\". Now everything works as I want, whether with the assistant or when I run git annex sync --content [--all] manually. """]]