[[!comment format=mdwn username="http://joeyh.name/" ip="209.250.56.87" subject="comment 1" date="2013-12-16T20:48:12Z" content=""" Sounds to me like it could be a messed up direct mode mapping file due to bugs in version 4.20130516. But I am not sure I follow your transcript; you don't seem to show how things looked when it went wrong. If it was the mapping, `git annex fsck` would correct the problem. """]]