[[!comment format=mdwn username="http://joeyh.name/" ip="209.250.56.246" subject="comment 1" date="2013-11-14T17:10:55Z" content=""" I suspect this might be the same underlying problem as [[bugs/Incorrect merge, direct repos (2)]]. However, I cannot reproduce it using the recipe given.. perhaps something was left out? I wrote this shell script to try to codify the recipe in a runnable form: [[!format sh \"\"\" #!/bin/sh set -e mkdir test cd test git init a cd a git annex init git annex direct touch firstfile git annex add firstfile git annex sync # think this was left out of recipe cd .. git clone a b cd b git annex direct echo bbbb > f git annex add f git annex sync || true cd .. cd a echo aaaa > f git annex add f git annex sync \"\"\"]] At this point, a has 2 variants of f, and no amount of syncing in either repo will cause either variant to go away. """]]