[[!comment format=mdwn username="jgoerzen" subject="Experienced this" date="2016-06-14T22:08:43Z" content=""" Hi, I experienced this just now. Have a git-annex assistant repo set up (so using direct mode). On one machine, I mv'd entire directories out of the git-annex repo. The other machine saw the files deleted, but the directories remained. On the machine on which I mv'd directories out, git-annex actually re-created some of them with symlinks to now-nonexistant hashes! I have no idea why it did that. """]]