[[!comment format=mdwn
 username="https://www.google.com/accounts/o8/id?id=AItOawmN5jDf53oRJZsTo8Ahj2uXzCzq6HcvEro"
 nickname="Gregory"
 subject="confirmed?"
 date="2014-07-15T01:29:00Z"
 content="""
I seem to be getting this behavior, in tandem with the [bad merge commit deleting all files](http://git-annex.branchable.com/bugs/bad_merge_commit_deleting_all_files/) on 

    git-annex version: 5.20140709-gf15d2aa
    build flags: Assistant Webapp Webapp-secure Pairing Testsuite S3 WebDAV Inotify DBus DesktopNotify XMPP DNS Feeds Quvi TDFA CryptoHash
    key/value backends: SHA256E SHA1E SHA512E SHA224E SHA384E SKEIN256E SKEIN512E SHA256 SHA1 SHA512 SHA224 SHA384 SKEIN256 SKEIN512 WORM URL
    remote types: git gcrypt S3 bup directory rsync web webdav tahoe glacier ddar hook external
    local repository version: unknown
    supported repository version: 5
    upgrade supported from repository versions: 0 1 2 4

Here is my log over the past couple weeks when I basically made no changes to the filesystem.

git log --oneline --decorate --color --graph

<pre>
* b304ad7 (HEAD, origin/synced/master, origin/master, origin/HEAD, master) 
* 568cf6c merge refs/remotes/diskb/synced/master
* 5e426d0 merge refs/remotes/diskb/synced/master
* b2fa076 merge refs/remotes/diskb/synced/master
*   b66a37d merge refs/remotes/diskb/synced/master
|\  
* | 910cba5 merge refs/remotes/diskb/synced/master
|/  
* 60736c3 merge refs/remotes/diskb/synced/master
*   a957439 merge refs/remotes/diskb/synced/master
|\  
* \   5c135c0 merge refs/remotes/diskb/synced/master
|\ \  
| |/  
* |   52d8b66 merge refs/heads/synced/master
|\ \  
* | | d77f3a2 merge refs/remotes/diskb/synced/master
| |/  
|/|   
* |   03bb56a merge refs/remotes/diskb/synced/master
|\ \  
* \ \   bb000db merge refs/heads/synced/master
|\ \ \  
| |/ /  
|/| /   
| |/    
* | 3bc8520 merge refs/heads/synced/master
|/  
* 1c3ee7e 
*   d3b096a merge refs/remotes/diskb/synced/master
|\  
* \   0fa0f6d merge refs/heads/synced/master
|\ \  
| |/  
* |   173592c merge refs/remotes/diskb/synced/master
|\ \  
| |/  
* |   3dd8086 merge refs/remotes/diskb/synced/master
|\ \  
| |/  
* |   68be2a1 merge refs/heads/synced/master
|\ \  
| |/  
* |   bb304f4 merge refs/remotes/diskb/synced/master
|\ \  
| |/  
|/|   
* | 1c9a2cd 
* | 298b362 merge refs/heads/synced/master
|/  
*   4c23257 merge refs/remotes/diskb/synced/master
|\  
* | b709997 merge refs/remotes/diskb/synced/master
|/  
*   215f061 merge refs/remotes/diskb/synced/master
|\  
* \   e0f75b4 merge refs/heads/synced/master
</pre>
"""]]