fix regression

The file matcher needs to be run on the destination file not the tmp
file, in order for filename matches to work properly. However, it also
needs to be able to probe the file for size and mime type.

This is a quick fix to a regression. The double rename is not pretty.
It would be good to either have a way to run the largeFileMatcher
such that it is matching on the final filename but looks at the temp
file, or to make addAnnexedFile not need the temp file in a different
location.

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